Table 1 Characteristics of genes encoding LEA proteins in Arabidopsis thaliana
From: LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana
Number | AGI code | Description NCBI | Pfam family | group | GRAVY | predicted subcellular localization | expression |
|---|---|---|---|---|---|---|---|
1 | At1g01470 | LEA14 | LEA_2 | LEA_2 | 0.056 | other | Everywhere |
2 | At1g02820 | LEA3 family protein | LEA_3 | LEA_3 | -0.491 | Chloroplast | Stress |
3 | At1g03120 | seed maturation family protein * | SMP | SMP | -0.564 | other | Seed |
4 | At1g20440 | Dehydrin, COR47 | dehydrin | dehydrin | -1.257 | other | Non-seed + stress |
5 | At1g20450 | dehydrin ERD10, LTI45 | dehydrin | dehydrin | -1.34 | other | Non-seed + stress |
6 | At1g32560 | group 1 domain-containing protein | LEA_1 | LEA_1 | -1.042 | other | Seed |
7 | At1g52690 | similar to LEA protein from B. napus | LEA_4 | LEA_4 | -1.317 | other | Bud, seed + stress |
8 | At1g54410 | dehydrin family protein | dehydrin | dehydrin | -1.868 | other | Non-seed + stress |
9 | At1g72100 | LEA domain-containing protein | LEA_4 | LEA_4 | -0.46 | secreted | Seed |
10 | At1g76180 | dehydrin ERD14 | dehydrin | dehydrin | -1.265 | other | Non-seed |
11 | At2g03740 | LEA domain-containing protein | LEA_4 | LEA_4 | -0.703 | Chloroplast | Bud |
12 | At2g03850 | LEA domain-containing protein | LEA_4 | LEA_4 | -0.496 | Chloroplast | Bud |
13 | At2g18340 | LEA domain-containing protein | LEA_4 | LEA_4 | -0.93 | secreted | Seed |
14 | At2g21490 | dehydrin family protein | dehydrin | dehydrin | -1.032 | other | Seed |
15 | At2g23110 | similar to LEA proteins | - | PvLEA18 | -1.059 | other | Seed |
16 | At2g23120 | unknown protein | - | PvLEA18 | -1.001 | other | Everywhere |
17 | At2g33690 | similar to PvLEA18 | - | PvLEA18 | -1.311 | other | Bud |
18 | At2g35300 | LEA_1 domain containing protein | LEA_1 | LEA_1 | -1.156 | other | Salt |
19 | At2g36640 | LEA protein AtECP63 | LEA_4 | LEA_4 | -1.023 | other | Seed |
20 | At2g40170 | Em-like protein GEA6/EM6 | LEA_5 | LEA_5 | -1.407 | other | Everywhere |
21 | At2g41260 | Late embryogenesis abundant protein M17 | - | AtM | -0.704 | secreted | Seed |
22 | At2g41280 | Late embryogenesis abundant protein M10 | - | AtM | -0.011 | secreted | Seed |
23 | At2g42530 | cold-regulated protein COR15b | - | LEA_4 | -0.542 | Chloroplast | Non-seed + stress |
24 | At2g42540 | cold-regulated protein COR15a | - | LEA_4 | -0.554 | Chloroplast | Non-seed + stress |
25 | At2g42560 | LEA domain-containing protein | LEA_4 | LEA_4 | -0.978 | other | Seed + salt |
26 | At2g44060 | LEA domain-containing protein | LEA_2 | LEA_2 | -0.314 | other | Non-seed + stress |
27 | At2g46140 | LEA domain-containing protein | LEA_2 | LEA_2 | 0.123 | other | Seed + root |
28 | At3g02480 | ABA-responsive protein-related | LEA_4 | LEA_4 | -1.213 | other | Reproductive, seed + salt |
29 | At3g15670 | LEA domain-containing protein | LEA_4 | LEA_4 | -1.369 | other | Seed |
30 | At3g17520 | LEA domain-containing protein | LEA_4 | LEA_4 | -1.047 | secreted | Seed |
31 | At3g22490 | RAB28 | SMP | SMP | -0.193 | other | Seed |
32 | At3g22500 | Seed maturation protein AtECP31 | SMP | SMP | -0.341 | other | salt |
33 | At3g50970 | dehydrin Xero2/LTI30 | dehydrin | dehydrin | -1.173 | other | Everywhere |
34 | At3g50980 | dehydrin Xero1 | dehydrin | dehydrin | -1.053 | other | Seed |
35 | At3g51810 | putative embryonic abundant protein AtEM1 | LEA_5 | LEA_5 | -1.468 | other | Seed |
36 | At3g53040 | LEA domain-containing protein | LEA_4 | LEA_4 | -1.194 | other | Seed |
37 | At3g53770 | LEA protein-related | LEA_3 | LEA_3 | -0.79 | Mitochondrion | Seed |
38 | At4g02380 | LEA_3 family protein SAG21 | LEA_3 | LEA_3 | -0.36 | Chloroplast | Everywhere |
39 | At4g13230 | LEA domain-containing protein | LEA_4 | LEA_4 | -0.831 | Mitochondrion | Bud |
40 | At4g13560 | LEA domain-containing protein | LEA_4 | LEA_4 | -1.181 | other | Reproductive |
41 | At4g15910 | drought-responsive protein AtDI21 | LEA_3 | LEA_3 | -0.526 | Chloroplast | Everywhere |
42 | At4g21020 | LEA domain-containing protein | LEA_4 | LEA_4 | -1.291 | Mitochondrion | Seed |
43 | At4g36600 | LEA domain-containing protein | LEA_4 | LEA_4 | -1.072 | Mitochondrion | Seed |
44 | At4g38410 | putative dehydrin | dehydrin | dehydrin | -1.629 | other | Root |
45 | At4g39130 | dehydrin family protein | dehydrin | dehydrin | -0.774 | other | Seed + bud |
46 | At5g06760 | LEA group 1 domain-containing protein | LEA_1 | LEA_1 | -0.815 | other | Seed + salt |
47 | At5g27980 | seed maturation family protein | SMP | SMP | -0.373 | other | Bud |
48 | At5g44310 | LEA domain-containing protein | LEA_4 | LEA_4 | -1.409 | Chloroplast | Seed |
49 | At5g53260 | seed maturation family protein | SMP | SMP | -0.273 | Chloroplast | Seed |
50 | At5g53270 | seed maturation family protein | SMP | SMP | -0.103 | other | Seed |
51 | At5g66400 | dehydrin RAB18 | dehydrin | dehydrin | -1.182 | other | Seed + stress |