Table 3 Species abbreviations. Fungi are prefixed with 'f', red algae with 'r', plants with 'p", Alveolata (ciliates, dinoflagellates, Apicomplexa) with 'a', jakobids with 'j', Cercozoa with 'c', Cryptophyta with 'cr', excavates with 'e', haptophytes with 'h', heterolobosea with 'l', and slime molds with 's'.
Codes | Species names |
|---|---|
Acm | Acropora millepora (Cnidaria) |
Ag | Anopheles gambiae (malaria mosquito) |
At | Achaearanea tepidariorum (common house spider) |
Bf | Branchiostoma floridae (Florida lancelet, Amphioxus) |
Bm | Brugia malayi (nematode, Chromadorea) |
Cap | Capitella sp. I ECS-2004 (polychaete) |
Cb | Caenorhabditis briggsae (nematode, Chromadorea) |
Ce | Caenorhabditis elegans (nematode, Chromadorea) |
Cr | Caenorhabditis remanei (nematode, Chromadorea) |
Dm | Drosophila melanogaster (fruitfly) |
Dh | Drosophila hydei |
Dr | Danio rerio (zebrafish) |
Gb | Gryllus bimaculatus (two-spotted cricket) |
Lv | Lytechinus variegatus (green sea urchin) |
Hm | Hydra magnipapillata (Cnidaria) |
Mb | Monosiga brevicollis (choanoflagellate) |
Mi | Meloidogyne incognita (southern root-knot nematode, Chromadorea) |
Mm | Mus musculus (mouse) |
Mo | Monosiga ovata (choanoflagellate) |
Nv | Nematostella vectensis (Cnidaria, starlet sea anemone) |
Ob | Octopus bimaculoides (mollusc) |
Oc | Oscarella carmela (sponge) |
Pt | Parastrongyloides trichosuri (nematode, Chromadorea) |
Pv | Patella vulgata (common limpet, mollusc) |
Sp | Strongylocentrotus purpuratus (sea urchin) |
Tr | Takifugu rubripes (fugu) |
Ts | Trichinella spiralis (nematode, Enoplea) |
XC | Xiphinema index CSEQDL01 (nematode, Enoplea) |
aAc | Amphidinium carterae (dinoflagellate, Alveolata) |
aAt | Alexandrium tamarense (dinoflagellate, Alveolata) |
aCm | Cryptosporidium muris (Apicomplexa, Alveolata) |
aCp | Cryptosporidium parvum (Apicomplexa, Alveolata) |
aKb | Karenia brevis (dinoflagellate, Alveolata) |
aKm | Karlodinium micrum (dinoflagellate, Alveolata) |
aTt | Tetrahymena thermophila (ciliate, Alveolata) |
cBn | Bigelowiella natans (Cercozoa) |
crGt | Guillardia theta (Cryptophyta) |
eTf | Tritrichomonas foetus (Parabasalidea, excavates) |
fAc | Ajellomyces capsulatus (ascomycetes, fungus) |
fCg | Chaetomium globosum (ascomycetes, fungus) |
fCt | Candida tropicalis (ascomycetes, fungus) |
fGm | Glomus mosseae (Glomeromycota, fungus) |
fGz | Gibberella zeae (ascomycetes, fungus) |
fMg | Magnaporthe grisea (ascomycetes, rice blast fungus) |
fNc | Neurospora crassa (ascomycetes, fungus) |
hPh | Pleurochrysis haptonemofera (haptophytes) |
jJl | Jakoba libera (jakobids) |
lNg | Naegleria gruberi (heterolobosea) |
pAt | Arabidopsis thaliana (plants) |
pOs | Oryza sativa (rice, plants) |
pPp | Physcomitrella patens (moss, plants) |
pSl | Selaginella lepidophylla (club moss, plants) |
pSm | Selaginella moellendorffii (club moss, plants) |
RCc | Chondrus crispus (carragheen, red algae) |
RGc | Gracilaria changii (red algae) |
RGj | Griffithsia japonica (red algae) |
RPh | Porphyra haitanensis (red algae) |
RPy | Porphyra yezoensis (red algae) |
SPp | Physarum polycephalum (slime mold, amoebozoa) |