The Songbird Neurogenomics (SoNG) Initiative: Community-based tools and strategies for study of brain gene function and evolution

Table 6 zenk-hybridizing sequences on the 20 K microarray (ordered as in Figure 1).

ID	Description	Fold Increase^a	Raw p^b	FDR^c	Mean intensity^d
Canary e12 cDNA	Replicated control	2.0	1.5E-59	0.00	3661
Zebra finch cDNA	Single-spotted control	2.1	2.1E-03	0.16	3602
SB02047B2F12.f1	5'-most EST	1.2	1.0E-01	0.35	9005
SB03008A1H11.f1	Central EST	1.7	3.6E-04	0.15	5551
SB03026B1F05.f1	3'-most EST	2.3	7.6E-06	0.05	4799

a. Mean of intensity ratios for song-stimulated sample divided by silence control sample (n = 6 pairs).
b. P-value (uncorrected for multiple testing) of null hypothesis that song and silence groups have the same distributions, derived from a 2-stage parametric linear model (Methods).
c. False Discovery Rate [81].
d. Mean of all measurements (all replicate spots against all samples); background intensities were less than 60 in all cases.

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