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Table 3 Relative quantitative expression and Copy number status of the genes/gene fragments tagged with GACA & GATA repeat motifs, originating from different somatic/gonadal tissues and spermatozoa#

From: Organization and differential expression of the GACA/GATA tagged somatic and spermatozoal transcriptomes in Buffalo Bubalus bubalis

S.N. Clone ID Accession Numbers Relative expression in different tissues (in folds) Relative expression in spermatozoa from four buffaloes Copy number status per haploid genome
    Testis Ovary Spleen Liver Lung Kidney Heart SP1 SP2 SP3 SP4   
A. For transcripts tagged with GACA repeat motif In blood In germline
1. pJC40 DQ494483 194 21 23 17 2 Cb 3 274 181 147 239   
2. pJC42 DQ494485 32 8 2 30 7 51 Cb 29 17 21 27 2–3 2–3
3. pJC52 DQ534910 512 32 34 83 24 60 Cb 6 9 5 7 3 3
4. pJC54 DQ834345 208 28 15 69 3 Cb 1 107 119 97 157 1 1
5. pJC29 DQ289479 15 10 13 45 Cb 20 22 49 52 32 45 1 1
6. pJC35 DQ304116 147 24 51 45 3 Cb 3 39 32 51 39 1–2 1–2
7. pJC44 DQ534902 44 21 17 34 11 25 Cb 97 111 97 128 1 1
8. pJC46 DQ534904 7 6 2 18 3 Cb 3 14 22 11 12 2 2
9. pJC47 DQ534905 34 11 14 91 Cb 14 2 73 97 87 84 1 1
10. pJC49 DQ534907 3521 891 330 637 238 Cb 630 2896 4792 2702 3326 1 1
11. pJC51 DQ534909 1663 157 338 2521 3 5 Cb 362 239 512 676 1 1
12. pJC53 DQ834344 17 13 5 29 4 Cb 45 18 14 12 16 2 2
13. pJSC11 DQ845144 4390 1176 664 1097 Cb 2 1195 6616 5120 8526 7342 25–65 30–65
14. pJSC1 DQ789045 46 35 40 36 12 15 Cb 36 21 23 27 1 1
16. pJSC3 DQ789047 156 45 12 87 Cb 2 37 1176 724 776 1440 1 1
17. pJSC4 DQ789048 149 222 376 34 Cb 10 6 675 630 608 588 2 2
18. pJSC5 DQ789049 128 2 2 9 2 Cb 2 62 47 41 38 2 2
19. pJSC6 DQ834346 31 21 30 14 Cb 13 51 52 97 84 55 1 1
20. pJSC9 DQ845142 53 4 3 4 3 Cb 3 15 14 15 14 2 2
21. pJSC10 DQ845143 3 3 12 4 Cb 14 3 6 4 9 3 3 3
22. pJSC12 DQ845145 91 6 28 52 2 6 Cb 138 97 119 97 1 1
23. pJSC13 DQ845146 228 181 246 34 2 74 Cb 1782 1910 1097 1351 1 1
24. pJSC15 DQ904037 39 4 26 13 Cb 5 2 49 35 45 39 8–13 8–10
25. pJSC16 DQ904038 31 Cb 14 9 2 2 1 117 112 127 118 1 1
26. pJSC17 DQ904039 27 22 19 15 9 16 Cb 14 29 18 20 1 1
27. pJSC18 DQ913640 18 7 42 28 Cb 9 2 34 23 42 23 1 1
28. pJSC19 DQ913641 85 24 35 28 2 13 Cb 69 68 83 52 2 2
29. pJSC20 DQ913642 89 74 88 81 Cb 65 74 81 88 71 82 1 1
30. pJSC22 DQ913644 Cb 4 4 2 2 8 3 75 69 54 61 2–3 2
31. pJSC23 DQ913645 2 2 12 4 10 2 Cb 55 73 41 67 1 1
32. pJSC24 DQ913646 2 1 12 2 Cb 2 1 48 27 42 32 1 1
33. pJSC25 DQ916743 149 127 104 21 109 64 Cb 239 194 195 256 1 1
B. For transcripts tagged with GATA repeat motif   
1. pJSC28 EF050082 114 58 16 5 Cb 2 3 51 48 34 42 2–4 2–4
2. pJSC30 EF050084 169 20 65 48 Cb 1 1 168 128 113 137 1 1
3. pJSC31 EF051516 65 30 23 35 Cb 10 5 59 48 53 43 2 2
4. pJSC32 EF051517 326 33 28 52 Cb 8 3 1351 1261 1351 1261 1 1
5. pJSC33 EF051518 239 57 14 68 2 44 Cb 42 68 55 73 3–5 3–5
6. pJSC34 EF051519 490 78 19 14 Cb 37 3 589 510 465 610 2 2
7. pJC87 EF592582 386 39 14 9 Cb 2 3 314 296 357 260 1 1
8. pJC88 EF592583 134 87 93 102 4 15 Cb 201 174 124 145 1–2 1–2
  1. # The expression for gene fragments tagged with GACA repeat is described in (A) whereas for GATA-tagged ones in (B). Note the highest expression of most of the GACA-tagged and all GATA-tagged genes in testis and/or spermatozoa.
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