Comparative genomic analysis of Mycobacterium avium subspecies obtained from multiple host species

BMC Genomics

Table 1 Mycobacterium avium large sequence polymorphisms. Genomotypes from the present study that contain the indicated sequences are listed. Supporting evidence from previous studies is provided and includes the designations used to describe individual polymorphisms.

ORF start	ORF end	Start^b	End^b	Present study	Dohmann 2003	Semret 2004	Talaat 2006	Semret 2006
MAH0238		254394	294226	HOM		LSPA 3	MAV-1
MAH0439		461414	492800	HOM		LSPA 7	MAV-2
MAH0636		666033	675725	HOM		LSPA12	MAV-3
MAH0722		747095	794450	HOM		LSPA 5	MAV-4
MAH1019	MAH1021	1049356^a		HOM, AV-SI
MAH1354		1421722	1439626	HOM		LSPA 14	MAV-5
MAH1374		1444205	1463365	HOM		LSPA 13	MAV-6
MAH1663		1795281	1991691	HOM		LSPA 4	MAV-7
MAH1834	MAH1858	1992430		HOM, MAP Sheep	PIG-RDA 20			LSPA 4-II
MAH1940		2097907	2100883	HOM			MAV-8
MAH2053		2220320	2241163	HOM		LSPA 10	MAV-9
MAH2085		2259120	2271610	HOM			MAV-10
MAH2254		2462693	2466285	HOM			MAV-11
MAH2331		2549555	2730999	HOM		LSPA 1	MAV-12
MAH2591		2815625	2821149	HOM			MAV-13
MAH2766		3008716	3036980	HOM			MAV-14
MAH2772	MAH2791	3014473^a		HOM, MAP Sheep	PIG-RDA 30
MAH2829	MAH2830	3077414^a		AV-SI
MAH2916		3214820	3219550	HOM, AV-SI			MAV-15
MAH3023	MAH3026	3340393	3384549	HOM, AV-SI			MAV-16
MAH3034		3392586	3413804	HOM		LSPA 9	MAV-17
MAH3041	MAH3052	3399659^a		HOM, MAP Sheep, AV-SI
MAH3156		3523417	3527334	HOM			MAV-18
MAH3296		3670518	3675686	HOM			MAV-19
MAH3542		3917752	3939034	HOM		LSPA 2	MAV-20
MAH3858	MAH3866	4254594	4261488	HOM, AV-SI			MAV-21
MAP4086	MAP4091	4674473	4682256	HOM, MAP, AV-SI		LSPA11
MAH4657	MAH4665	5122371	5132301	HOM, AV-SI		LSPA 8	MAV-22
MAH4704	MAH4709	5174641	5270187	HOM, AV-SI		LSPA 6	MAV-23
MAH4893	MAH4910	5378903	5395102	HOM, MAP Sheep, AV-SI	PIG-RDA 10		MAV-24	LSPA 18

ISSN: 1471-2164