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Table 1 NAGNAG acceptors in Arabidopsis SR and SR-related protein-coding genes. In summary, 36 NAGNAG-containing introns occur in 30 genes. Genes are classified into SR and SR-related protein coding genes. Splicing ratios are given as absolute EST counts ("#"). Column 'heptamer motif' specifies the heptamer sequence of the NAGNAG acceptor sites used for the sequence-based prediction; here, "|" marks the annotated acceptor. Predicted E-transcript proportions are listed in column 'E-transcript predicted'. Gene names are grey shaded if they contain two NAGNAG acceptors.

From: Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes

Gene Name SR SR-related Intron # ESTs E-transcript # ESTs I-transcript Heptamer motif E-transcript predicted (%)
At5g52040 RS41 x   2 5 17 AAG|CAG,G 7
At4g31580 RSZ22 x   3 15 0 TAG|GAG,C 99
At3g13570 SCL30a x   3 13 0 TAG|GAG,G 99
At1g55310 SR33/SCL33 x   3 0 8 CAG,CAG|A 48
At1g16610 SR45 x   7 0 12 CAG,CAG|G 48
At1g16610 SR45 x   9 0 12 AAG,CAG|G 7
At1g23860 SRZ21 x   3 13 0 CAG|GAG,A 100
At2g24590 SRZ22a x   3 8 0 CAG|AAG,A 98
At1g07350    x 2 21 0 TAG|GAG,A 100
At1g22910    x 1 7 0 TAG|GAG,C 99
At1g53650 CID8   x 4 7 0 CAG|AAG,G 97
At1g60000 cp29   x 1 6 0 CAG|GAG,T 100
At1g60900 U2AF65   x 2 3 0 CAG|GAG,A 100
At1g60900 U2AF65   x 4 0 2 TAG,CAG|G 17
At1g76940    x 1 2 0 TAG|AAG,G 83
At2g24350    x 4 0 2 AAG,CAG|T 7
At2g24350    x 1 5 0 CAG|GAG,T 100
At2g35410 cp33   x 3 16 0 TAG|GAG,T 100
At2g37220 cp29   x 2 22 0 TAG|GAG,T 100
At2g43370 U11–35K   x 4 0 6 TAG,CAG|G 17
At2g43370 U11–35K   x 5 5 0 CAG|GAG,T 100
At3g23830 GR-RBP4/GRP4   x 3 15 0 CAG|GAG,T 100
At3g26420 ATRZ-1A   x 3 5 0 TAG|AAG,G 83
At3g51950    x 4 6 0 CAG|GAG,G 100
At3g54230    x 5 0 3 GAG,CAG|G 1
At3g54230    x 6 0 3 TAG,CAG|C 25
At4g35785    x 4 0 0 CAG,AAG|T 98
At4g36960    x 8 5 0 TAG|GAG,A 100
At5g02530    x 2 6 0 TAG|GAG,A 100
At5g03580 PABP   x 1 0 1 GAG,TAG|G 0
At5g09880    x 1 5 0 CAG|AAG,A 98
At5g44200 CBP20   x 1 4 0 CAG|GAG,A 100
At5g44200 CBP20   x 7 6 0 CAG|GAG,G 100
At5g47320 RPS19   x 3 8 0 TAG|GAG,T 100
At5g53180 PTB   x 7 0 7 GAG,TAG|G 0
At5g59950    x 1 0 11 TAG,CAG|A 7