Skip to main content

Table 1 sRNAs transcripts observed in P. aeruginosa PAO1

From: Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species

Intergenic region a Coordinates in PAO1 genome (bp) 5' gene 3' gene sRNA
   Length (bp) Dir.b Length (bp) Dir.b Predicted length (nt)c Observed length (nt)d Dir.g
491 912780–913085 1185 < 486 > 90 100, 200 >
622 1140860–1141267 1146 > 465 >   200, 300 ?
645 1204782–1205770 1149 > 1767 > 300 ± 10 300 <
888 = ffs 1668833–1669085 378 > 867 < 113 90 >
1059 1996807–1997508 1659 < 1041 <   150, 200, 300 ?
1466 2918212–2918965 1041 > 534 <   300 ?
1559 3112151–3112876 519 > 900 >   250, 300e ?
1698 = rgsA 3318657–3318881 1134 > 777 < 120 ± 10 100, 300 >
1714 3360654–3360873 1386 < 3474 >   200 ?
1887 3705161–3705888 1995 < 603 < 210 ± 10 200 <
2315 4536493–4536919 660 < 1122 < 160 ± 10 180 <
2510 = rnpB 4956029–4956732 452 < 849 < 208 200 <
2626 5196833–5197184 1464 > 576 >   200 >
2667 = prrF1,2 5283906–5284368 798 > 888 < 110, 110 100, 110 f >>
  1. a Transcripts that were also found by Livny et al. [20] are shown in boldface
  2. b Dir., direction of flanking genes
  3. c Lengths of transcripts described in other studies are indicated by their experimental values; otherwise, predicted lengths are estimates ± 10 nt
  4. d Bands that were observed in cells grown in NYB, GGP or MME medium; estimated size ± 10 nt
  5. e Not tested in GGP and MME medium
  6. f No transcript was observed in cells grown in NYB or GGP in exponential phase; transcripts were present in stationary phase cells grown in all media
  7. g Dir., direction of sRNA genes. When rho-independent terminators are predicted to be present, the direction of the sRNA is annotated (> or <). When the direction is unknown, this is indicated by a question mark