Skip to main content

Table 6 genes transcriptionally up-regulated by both ripening and cold.

From: Heterologous microarray experiments allow the identification of the early events associated with potato tuber cold sweetening

Probeset ID Avg. signal 17°C Avg. signal 4°C Fold change Adjusted P. Value Best potato match Annotation
Les.1936.1.S1_at 11.58 1990.21 171.51 0.00129 TA27416_4113 Early light inducible protein (Solanum lycopersicum) [64]; TC116636
Les.4223.1.S1_at 4.79 330.56 69.20 0.00189 TA28833_4113 alternative oxidase 1a (Solanum lycopersicum) [64]; TC116692
Les.4829.1.S1_at 14.26 586.14 40.29 0.00189 CV498197 2-oxoglutarate-dependent dioxygenase (Solanum lycopersicum) [64]; TC115851
Les.3338.1.S1_at 7.75 222.86 29.98 0.00300 TA24335_4113 S-adenosyl-L-methionine synthetase 1 (Daucus carota) [105]
Les.220.1.S1_at 8.10 226.46 28.2 0.00182 TA25585_4113 AER (Nicotiana tabacum) [106]
LesAffx.49935.1.S1_at 20.28 510.32 26.62 0.00384 TA28438_4113 Pyruvate decarboxylase (Solanum tuberosum) [64]; TC1163
Les.3551.1.S1_at 17.51 390.08 22.9 0.00255 CV475083 Ethylene-responsive transcriptional coactivator (ER24)(Solanum lycopersicum) [76]
Les.2988.1.S1_at 84.47 1601.26 18.92 0.00182 TA25065_4113 Cinnamic acid 4-hydroxylase (Capsicum annuum) [64]; TC124119
LesAffx.44987.1.S1_at 13.27 222.49 16.76 0.00175 TA38177_4113 Solanesyl diphosphate synthase (Hevea brasiliensis (Para rubber tree) geranyl diphosphate synthase (Arabidopsis thaliana) [64]; TC116882
Les.3651.1.S1_at 108.84 1738.28 16.03 0.00224 TA24332_4113 S-adenosyl-L-methionine synthetase (Nicotiana tabacum) [107]
Les.2560.1.S1_at 7.42 103.61 13.90 0.00226 TA25537_4113 Ethylene-forming enzyme (Solanum lycopersicum) [64]; TC123934
Les.4412.1.A1_at 10.95 133.78 12.10 0.00209 TA26173_4113 Leucoanthocyanidin dioxygenase 2, putative (Arabidopsis thaliana) [108]
Les.5956.1.S1_s_at 130.33 1406.81 10.88 0.00276 TA23754_4113 Cold-stress inducible protein (CI7) (Solanum tuberosum) [64]; TC116013
Les.4150.1.S1_at 173.18 1515.29 8.74 0.00287 TA29480_4113 Mitochondrial small heat-shock protein (Solanum lycopersicum) [64]; TC124001
Les.5826.1.S1_at 136.17 1105.79 8.12 0.00226 TA28749_4113 Cathepsin B-like cysteine proteinase (Solanum tuberosum) [64]; TC124060
LesAffx.1959.1.S1_at 28.53 224.93 7.88 0.00224 TA25003_4113 Glutathione S-transferase. class-phi (Solanum commersonii) [64]; TC116034
LesAffx.47187.1.S1_at 41.05 293.51 7.14 0.00236 TA36088_4113 Universal stress protein/early nodulin ENOD18-like [64]; TC123970
Les.3171.3.S1_a_at 18.56 120.71 6.50 0.00249 TA30735_4113 Phytoene synthase. chloroplast precursor (Capsicum annuum) [64]; TC115970
Les.3813.1.S2_at 142.73 855.96 6.38 0.01985 TA23078_4113 S-adenosylmethionine decarboxylase proenzyme [64]; TC123879
Les.3085.1.S1_at 28.13 178.22 6.28 0.00391 BG888309 Flavonol synthase/flavanone 3-hydroxylase (Solanum tuberosum) [64]; TC116718
Les.3285.1.S1_at 311.71 1908.05 6.13 0.00384 TA27830_4113 Acyl carrier protein (Capsicum chinense) [64]; TC124728
LesAffx.34336.1.S1_at 65.09 382.59 6.12 0.00895 TA46602_4113 70 kD heat-shock protein (Arabidopsis thaliana) [64]; TC126413
Les.4573.1.S1_at 28.35 150.86 5.50 0.00889 TA28898_4113 Guanylate kinase (Nicotiana tabacum) [64]; TC115887
LesAffx.69795.1.S1_at 27.80 148.00 5.32 0.00458 TA37100_4113 Putative methionine sulfoxide reductase B (Oryza sativa) [109]
Les.274.1.S1_at 8.38 29.61 3.53 0.01158 BQ046569 Ripening regulated protein DDTFR10/A (Solanum lycopersicum) [64]; TC116368
Les.824.1.S1_at 64.19 169.95 2.79 0.04315 TA30812_4113 Glucose-6-phosphate 1-dehydrogenase precursor (Solanum tuberosum) [64]; TC116406
Les.2702.1.S1_a_at 7.53 20.97 2.66 0.03637 TA26908_4113 Acid invertase (Solanum tuberosum) [64]; TC123895
Les.205.1.S1_at 174.85 461.58 2.64 0.00847 TA24762_4113 14-3-3 protein (Solanum tuberosum) [64]; TC116260
Les.2992.1.S1_a_at 87.62 225.46 2.58 0.01367 BQ504492 Callus-expressing factor (Nicotiana tabacum) JERF3; [99]
Les.3933.1.S1_at 1933.65 4519.78 2.33 0.00978 TA24146_4113 Adenosylhomocysteinase (Solanum lycopersicum) [64]; TC116044
LesAffx.10807.1.S1_at 18.17 35.73 1.96 0.01649 TA28665_4113 Heat-shock cognate 70 kDa protein (Petunia hybrida) [64]; TC126297
LesAffx.32723.1.S1_at 40.30 68.27 1.69 0.03380 TA26759_4113 BZIP transcription factor ATB2 (Glycine max) [64]; TC124112
Les.283.1.S1_at 138.53 228.92 1.65 0.03786 CV477421 Induced stolon tip protein (Capsicum annuum) [64]; TC124196
Les.303.1.S1_at 5852.89 9264.98 1.57 0.04951 TA24257_4113 Enolase (Solanum lycopersicum) [64]; TC123931
  1. Selected entries from a set of genes, which are transcriptionally up-regulated by both ripening (various databases as indicated) and cold (our GeneChip dataset). TED database [64] refers to a recent list of tomato ripening-up-regulated genes (transition from mature green to breaker stage) and the ID of the corresponding tomato Tentative Consensus (TC) entry is reported. Fold changes represent the ratios of stress to control average signals (two biological replicates for both control and stress conditions). Further details are as described in Table 2.