|
Actual localization
|
Total
|
TP
|
FP
|
FN
|
TN
|
Precision
|
Recall
|
|---|
|
PSORTb
| | | | | | | |
|
CP
|
145
|
110
|
1
|
35
|
110
|
99.10%
|
75.86%
|
|
CM
|
69
|
55
|
2
|
14
|
166
|
96.49%
|
79.71%
|
|
PP
|
29
|
18
|
0
|
11
|
207
|
100.00%
|
62.07%
|
|
OM
|
38
|
30
|
0
|
8
|
195
|
100.00%
|
78.95%
|
|
EX
|
18
|
6
|
3
|
12
|
216
|
66.67%
|
33.33%
|
|
Total
|
299
|
219
|
6
|
80
|
894
|
97.33%
|
73.24%
|
|
Proteome Analyst
| | | | | | | |
|
CP
|
145
|
94
|
0
|
51
|
119
|
100.00%
|
64.83%
|
|
CM
|
69
|
59
|
2
|
10
|
162
|
96.72%
|
85.51%
|
|
PP
|
29
|
19
|
3
|
10
|
201
|
86.36%
|
65.52%
|
|
OM
|
38
|
31
|
0
|
7
|
192
|
100.00%
|
81.58%
|
|
EX
|
18
|
9
|
6
|
9
|
207
|
60.00%
|
50.00%
|
|
Total
|
299
|
212
|
11
|
87
|
881
|
95.07%
|
70.90%
|
|
ProtCompB
| | | | | | | |
|
CP
|
145
|
127
|
11
|
18
|
144
|
92.03%
|
87.59%
|
|
CM
|
69
|
55
|
7
|
14
|
227
|
88.71%
|
79.71%
|
|
PP
|
29
|
19
|
9
|
10
|
261
|
67.86%
|
65.52%
|
|
OM
|
38
|
23
|
18
|
15
|
243
|
56.10%
|
60.53%
|
|
EX
|
18
|
11
|
4
|
7
|
277
|
73.33%
|
61.11%
|
|
Total
|
299
|
235
|
49
|
64
|
1152
|
82.75%
|
78.60%
|
|
Consensus vote
| | | | | | | |
|
CP
|
145
|
67
|
0
|
78
|
154
|
100.00%
|
46.21%
|
|
CM
|
69
|
43
|
0
|
26
|
230
|
100.00%
|
62.32%
|
|
PP
|
29
|
11
|
0
|
18
|
270
|
100.00%
|
37.93%
|
|
OM
|
38
|
19
|
0
|
19
|
261
|
100.00%
|
50.00%
|
|
EX
|
18
|
4
|
0
|
13
|
216
|
100.00%
|
23.53%
|
|
Total
|
299
|
144
|
0
|
154
|
1131
|
100.00%
|
48.32%
|
|
Majority vote (2 out of 3 predictions)
| | | | | | | |
|
CP
|
145
|
121
|
0
|
24
|
154
|
100.00%
|
83.45%
|
|
CM
|
69
|
59
|
0
|
10
|
230
|
100.00%
|
85.51%
|
|
PP
|
29
|
17
|
0
|
12
|
270
|
100.00%
|
58.62%
|
|
OM
|
38
|
29
|
0
|
10
|
213
|
100.00%
|
74.36%
|
|
EX
|
18
|
6
|
1
|
12
|
215
|
85.71%
|
33.33%
|
|
Total
|
299
|
232
|
1
|
68
|
1082
|
99.57%
|
77.33%
|
|
Combination method
| | | | | | | |
|
CP
|
N/A
|
N/A
|
N/A
|
N/A
|
N/A
|
N/A
|
N/A
|
|
CM
|
N/A
|
N/A
|
N/A
|
N/A
|
N/A
|
N/A
|
N/A
|
|
PP
|
29
|
25
|
0
|
4
|
56
|
100.00%
|
86.20%
|
|
OM
|
38
|
34
|
1
|
4
|
46
|
97.14%
|
89.47%
|
|
EX
|
18
|
12
|
2
|
6
|
65
|
85.71%
|
66.67%
|
|
Total
|
85
|
71
|
3
|
14
|
167
|
95.95%
|
87.53%
|
- 299 proteins obtained from the test set used in comparison study by Gardy and Brinkman [22] Majority vote is the result from 2 out of 3 predictions. Combination method: the result from non-consensus vote with significant DBsubloc [31] and/or GTD prediction [32] Precision is calculated as TP/(TP+FP), Recall is calculated as TP/(TP+FN) TP = true positive, TN = true negative, FP = false positive, FN = false negative, N/A= Not applicable
