Table 1 MYB, bHLH and bZIP genes scored as rhythmic by COSOPT. Total number of MYB, bHLH and bZIP on the genome, array and expressed in the circadian experiment (p < 0.1) is shown. Number of rhythmic genes is represented as total and percentage of the transcription factors on the array. The rhythmic scoring was performed at three different pMMC-beta thresholds.
Genome | GENEVESTIGATOR | COSOPT (pMMC-beta) | Rhythmic (%) on the array | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Total | All | (p < 0.1) | < 0.02 | < 0.05 | < 0.10 | < 0.02 | < 0.05 | <0.10 |
MYB | 131 | 122 | 51 | 4 | 9 | 16 | 3.3 | 7.4 | 13.1 |
bHLH | 162 | 111 | 81 | 12 | 19 | 27 | 10.8 | 17.1 | 24.3 |
bZIP | 75 | 67 | 53 | 6 | 14 | 17 | 9.0 | 20.9 | 25.4 |
Total | 368 | 300 | 185 | 22 | 42 | 60 | 7.3 | 14.0 | 20.0 |
| Â | Â | Â | Â | Â | Â | (all genes in Edwards K. D. et.al.) | |||
| Â | Â | Â | Â | Â | Â | Â | 7.6 | 15.4 | 22.54 |