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Table 2 Comparison of putative dif sites in H. akashiwo chloroplast genomes with those of selected bacteria and viruses

From: Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains

  XerC Binding Xer D
#H. akashiwo 1 ACTGAGCTAAT AGCCCAACA TTATGTTAAAT
&H. akashiwo 2 ATAGGCCTTCG TCCCCT TTATGTTAAAT
&H. akashiwo 3 ATTGAGGATCA TTTTTG TTATGTTAAAG
%H. akashiwo 4 AAAAACCAAAA AATAAT TTATGTTAAAG
*E. coli GGTGCGCATAA TGTATA TTATGTTAAAT
*S. typhimurium GGTGCGCATAA TGTATA TTATGTTAAAT
*S. typhi GGAGCGCATAA TGTATA TTATGTTAAAT
*V. cholerae chr 1 AGTGCGCATTA TGTATG TTATGTTAAAT
*V. cholerae chr 11 AATGCGCATTA CGTGCG TTATGTTAAAT
*H. influenzae ATTTCGCATAA TATAAA TTATGTTAAAT
*B. subtilis ACTTCCTAGAA TATATA TTATGTAAACT
*ColE1 cer GGTGCGTACAA TTAAGGGA TTATGGTAAAT
*pSC101 psi GGTGCGCGCAA GATCC TTATGTTAAAC
  1. # Present in CCMP452 and NIES293, on inverted repeat
  2. & Present in CCMP452 and NIES293, on large single copy
  3. % Present in NIES293, on inverted repeat
  4. * From Lesterlin et al, 2004 [77]