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Table 3 Presence of Single Nucleotide Polymorphisms in protein coding genes between H. akashiwo CCMP452 and NIES293

From: Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains

Gene Synonymous Non-synonymous
Ribosomal
rpl 12 - 1
rpl 19 - 1
rps 12 1 -
rps 14 - 1
rps 31 - 1
Translational
rpo B - 2
rpo C2 2 1
Photosystem/energy
psa A 2 -
psa D 1 -
psa E - 1
psb B 1 -
ycf 04A 1 -
atp A - 1
atp I 1 -
pet D 1 -
Metabolic
clp C 1 -
fts H 1 -
ilv B 1 -
sec A 1 1
sec Y 1 -
rbc L* (×2) 2 2
tsg 1 1 -
ycf 24B 1 -
ycf/orf
ycf 36 1 -
ycf 39 - 1
ycf 46 - 1
ycf 66 1 -
orf 006* (×2) 4 -
orf 021 1 1
orf 026 2 5
orf 041 - 5
Highly impacted genes   
Xer CC 2 10
orf 014D - 1
  1. * located on the inverted repeat
  2. A photosystem 1 assembly protein
  3. B ABC transporter protein
  4. C within the first 275 AAs
  5. D within the first 65 AAs