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Table 3 Presence of Single Nucleotide Polymorphisms in protein coding genes between H. akashiwo CCMP452 and NIES293

From: Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains

Gene

Synonymous

Non-synonymous

Ribosomal

rpl 12

-

1

rpl 19

-

1

rps 12

1

-

rps 14

-

1

rps 31

-

1

Translational

rpo B

-

2

rpo C2

2

1

Photosystem/energy

psa A

2

-

psa D

1

-

psa E

-

1

psb B

1

-

ycf 04A

1

-

atp A

-

1

atp I

1

-

pet D

1

-

Metabolic

clp C

1

-

fts H

1

-

ilv B

1

-

sec A

1

1

sec Y

1

-

rbc L* (×2)

2

2

tsg 1

1

-

ycf 24B

1

-

ycf/orf

ycf 36

1

-

ycf 39

-

1

ycf 46

-

1

ycf 66

1

-

orf 006* (×2)

4

-

orf 021

1

1

orf 026

2

5

orf 041

-

5

Highly impacted genes

  

Xer CC

2

10

orf 014D

-

1

  1. * located on the inverted repeat
  2. A photosystem 1 assembly protein
  3. B ABC transporter protein
  4. C within the first 275 AAs
  5. D within the first 65 AAs
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BMC Genomics

ISSN: 1471-2164

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