Table 3 Comparison of protein-coding genes in size, with identity of nucleotides and predicted amino acids for five ascaridoid species
Gene | Sizes of protein-coding genes | Identity of nucleotides/amino acids | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Tcan | Tcat | Tmal | Asu | Asi | Tcan/Tcat | Tcan/Tmal | Tcan/Asu | Tcan/Asi | Tcat/Tmal | Tcat/Asu | Tcat/Asi | Tmal/Asu | Tmal/Asi | Asu/Asi |
atp 6 | 598 | 598 | 598 | 600 | 600 | 88.8/91.0 | 85.5/89.9 | 78.1/79.9 | 79.1/80.9 | 89.1/93.0 | 79.8/79.4 | 79.4/80.9 | 80.8/81.4 | 78.6/82.4 | 77.7/85.4 |
cyt b | 1107 | 1107 | 1107 | 1098 | 1099 | 82.2/87.2 | 83.2/88.9 | 77.2/76.6 | 71.3/72.0 | 83.0/88.6 | 75.8/75.8 | 72.1/72.0 | 74.8/77.4 | 72.7/73.9 | 73.7/75.8 |
cox 1 | 1578 | 1578 | 1581 | 1578 | 1576 | 89.7/94.1 | 89.3/93.9 | 86.1/92.2 | 83.3/90.7 | 90.0/94.7 | 86.4/91.4 | 83.7/90.5 | 86.4/92.4 | 83.1/91.6 | 83.3/92.6 |
cox 2 | 714 | 711 | 711 | 699 | 699 | 87.8/94.9 | 89.5/95.8 | 85.1/90.9 | 80.7/88.4 | 87.8/95.8 | 84.7/91.4 | 80.7/88.8 | 85.7/90.9 | 82.1/87.9 | 82.1/90.1 |
cox 3 | 768 | 768 | 768 | 768 | 766 | 86.3/93.7 | 85.8/92.9 | 81.0/88.6 | 79.2/87.5 | 87.0/94.5 | 81.8/85.0 | 80.2/87.1 | 81.9/87.8 | 79.0/87.1 | 79.2/89.0 |
nad 1 | 873 | 873 | 873 | 873 | 873 | 85.3/91.7 | 87.5/93.1 | 80.2/80.7 | 81.3/85.9 | 87.1/94.5 | 80.8/83.1 | 82.1/87.2 | 81.0/81.7 | 82.0/86.2 | 80.6/83.4 |
nad 2 | 844 | 844 | 844 | 844 | 846 | 84.5/82.9 | 84.7/85.4 | 75.9/76.9 | 72.2/75.8 | 86.4/88.6 | 77.6/75.4 | 72.3/76.9 | 76.4/75.8 | 72.4/76.9 | 75.8/80.1 |
nad 3 | 336 | 336 | 336 | 336 | 336 | 87.5/88.3 | 86.6/85.6 | 80.4/81.1 | 82.4/85.6 | 84.5/84.7 | 85.1/84.7 | 81.0/84.7 | 79.5/79.3 | 79.5/79.3 | 78.9/83.8 |
nad 4 | 1230 | 1230 | 1230 | 1230 | 1230 | 83.1/87.8 | 81.4/86.6 | 75.0/78.2 | 71.8/76.0 | 82.0/86.6 | 74.7/77.8 | 73.8/78.5 | 75.0/78.7 | 72.3/77.5 | 74.8/80.9 |
nad 4L | 232 | 232 | 232 | 234 | 232 | 85.0/90.9 | 85.8/85.7 | 78.1/85.7 | 76.7/80.5 | 85.4/89.6 | 80.7/81.8 | 79.7/81.8 | 79.4/79.2 | 78.0/80.5 | 80.2/87.0 |
nad 5 | 1582 | 1582 | 1582 | 1585 | 1582 | 83.3/87.3 | 84.3/86.5 | 76.7/77.6 | 75.3/77.0 | 85.8/88.2 | 76.7/79.1 | 75.8/79.3 | 77.7/78.7 | 77.4/78.1 | 76.2/82.0 |
nad 6 | 434 | 434 | 434 | 435 | 435 | 83.7/85.4 | 83.0/80.6 | 72.6/72.2 | 71.0/72.9 | 86.4/88.9 | 76.3/73.6 | 72.6/73.6 | 76.1/73.6 | 72.6/72.2 | 74.0/80.6 |
rrn S | 697 | 696 | 696 | 701 | 699 | 89.9 | 90.4 | 82.8 | 81.9 | 92.2 | 82.3 | 84.2 | 81.5 | 82.3 | 83.4 |
rrn L | 958 | 955 | 955 | 960 | 957 | 83.6 | 82.4 | 72.9 | 69.5 | 85.2 | 73.0 | 72.1 | 72.5 | 71.6 | 71.5 |
EmtG | 14322 | 14029 | 14226 | 14284 | 13916 | 85.3 | 85.7 | 80.2 | 78.5 | 87.1 | 81.1 | 80.2 | 80.5 | 79.5 | 80.2 |