Table 1 All decapod mitogenomes sequenced to date and their nucleotide compositions.
Species | Suborder/Infraorder | Accession number | Length (bp) | Entire genome | Protein-coding gene | rrnL | rrnS | tRNAs | Control region | Reference | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | AT% | GC-skew | AT-skew | Length (aa) | AT% (all) | AT% (3rd) | Length (bp) | AT% | Length (bp) | AT% | Length (bp) | AT% | Length (bp) | AT% | Â |
Callinectes sapidus | Brachyura | NC_006281 | 16263 | 69.1 | -0.279 | -0.011 | 3712 | 67.0 | 76.5 | 1323 | 71.8 | 785 | 70.3 | 1463 | 71.6 | 1435 | 78.2 | [68] |
Portunus trituberculatus | Brachyura | NC_005037 | 16026 | 70.2 | -0.241 | -0.051 | 3715 | 68.9 | 81.4 | 1332 | 73.8 | 840 | 70.1 | 1468 | 72.0 | 1104 | 76.4 | [69] |
Pseudocarcinus gigas | Brachyura | NC_006891 | 15515 | 70.5 | -0.268 | -0.006 | 3734 | 68.8 | 79.6 | 1324 | 74.9 | 821 | 73.8 | 1460 | 73.2 | 593 | 80.3 | [70] |
Eriocheir sinensis | Brachyura | NC_006992 | 16354 | 71.7 | -0.248 | -0.015 | 3718 | 68.9 | 79.5 | 1311 | 77.4 | 899 | 76.6 | 1473 | 72.4 | 896 | 83.1 | [43] |
Geothelphusa dehaani | Brachyura | NC_007379 | 18197 | 74.9 | -0.341 | -0.014 | 3711 | 71.5 | 83.4 | 1315 | 77.1 | 821 | 76.4 | 1519 | 75.8 | 514 | 87.2 | [27] |
Pagurus longicarpus a | Anomura | NC_003058 | / | / | -0.213 | +0.029 | 3698 | 69.6 | 84.0 | 1303 | 77.1 | 789 | 77.2 | 1458 | 74.1 | / | / | [13] |
Shinkaia crosnieri b | Anomura | EU420129 | 15182 | 72.9 | -0.313 | -0.014 | 3698 | 71.0 | 82.3 | 1331 | 77.8 | 811 | 78.1 | 1194 | 73.7 | 327 | 83.5 | this study |
Cherax destructor | Astacidea | NC_011243 | 15895 | 62.4 | -0.280 | +0.029 | 3705 | 60.0 | 59.6 | 1302 | 67.9 | 917 | 68.3 | 1436 | 70.7 | 977 | 65.8 | [28] |
Panulirus japonicus | Palinura | NC_004251 | 15717 | 64.5 | -0.182 | -0.010 | 3715 | 62.6 | 66.8 | 1355 | 69.2 | 855 | 67.1 | 1484 | 68.9 | 786 | 70.6 | [71] |
Halocaridina rubra | Caridea | NC_008413 | 16065 | 63.2 | -0.303 | +0.055 | 3701 | 60.2 | 62.8 | 1351 | 68.2 | 872 | 68.8 | 1471 | 67.8 | 1020 | 78.4 | [72] |
Macrobrachium rosenbergii | Caridea | NC_006880 | 15772 | 62.3 | -0.291 | +0.151 | 3708 | 60.1 | 63.9 | 1305 | 66.0 | 852 | 66.0 | 1449 | 64.7 | 931 | 75.7 | [70] |
Penaeus monodon | Dendrobranchiata | NC_002184 | 15984 | 70.6 | -0.136 | -0.001 | 3716 | 69.3 | 83.7 | 1365 | 74.9 | 852 | 71.6 | 1494 | 68.0 | 991 | 81.5 | [73] |
Marsupenaeus japonicus | Dendrobranchiata | NC_007010 | 15968 | 66.5 | -0.215 | -0.018 | 3712 | 64.7 | 73.9 | 1367 | 70.5 | 853 | 67.9 | 1483 | 64.0 | 992 | 82.5 | [74] |
Fenneropenaeus chinensis | Dendrobranchiata | NC_009679 | 16004 | 68.9 | -0.203 | -0.011 | 3710 | 67.5 | 80.7 | 1367 | 72.7 | 852 | 69.9 | 1501 | 65.9 | 997 | 82.3 | [47] |
Litopenaeus vannamei | Dendrobranchiata | NC_009626 | 15990 | 67.8 | -0.192 | -0.026 | 3710 | 66.1 | 77.0 | 1371 | 71.8 | 853 | 69.6 | 1493 | 65.3 | 998 | 82.5 | [47] |