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Table 1 SIDER2 elements present in the L. infantum chromosome 32 and comparison with their homologues in L. major

From: The SIDER2 elements, interspersed repeated sequences that populate the Leishmania genomes, constitute subfamilies showing chromosomal proximity relationship

L. infantum SIDER2 element L. major SIDER2 homologue
Namea Subfamily Size (%G+C) 79-bp signatureb Namec Size (%G+C) Sequence identity (%)
32-18439r A 560 (68.4) 2b 32-16072r 546 (67.4) 83
32-30662r A 560 (68.9) 2b 32-28347r 549 (67.2) 82
32-39696d A 570 (70.4) 2b 32-37464d 541 (64.3) 69
32-46425r A 570 (70.0) 2a 32-44074r 547 (67.8) 81
32-72349d A 568 (70.4) 2b 32-70108d 550 (69.3) 82
32-84516r A 546 (70.5) 2b 32-82363r 550 (68.7) 81
32-121058r A 550 (69.6) 2b 32-119100r 518 (64.5) 76
32-127617r A 515 (69.7) 2b 32-125634r 515 (63.5) 74
32-169517r B 564 (64.0) 2a 32-168081r 568 (64.1) 87
32-185886r B 564 (64.2) 2a 32-184597r 569 (64.2) 87
32-222503d C 594 (66.3) 2b 32-221358d 555 (68.7) 84
32-232971d C 578 (67.0) 2b 32-231497d 582 (69.1) 85
32-253342d C 578 (67.5) 2b 32-252118d 578 (68.9) 86
32-311078r   535 (61.7) 2b 32-308193r 601 (59.6) 79
32-354985d D 586 (63.5) 2b 32-351852d 574 (62.5) 87
32-367858d D 590 (63.6) 2b 32-364746d 574 (62.9) 86
32-420911d E 540 (68.0)   32-413631d 561 (67.7) 84
32-456060d E 556 (67.8)   32-448879d 566 (67.3) 85
32-460150r E 555 (67.8)   32-452988r 562 (67.6) 86
32-520410d F 661 (68.4)   32-515291d 663 (70.7) 78
32-542863d* F 422 (68.5)   32-537679d 579 (71.7) 59
32-546470r F 679 (68.3)   32-541585r 662 (71.0) 77
32-588727r F 588 (66.7)   32-584100r 528 (70.6) 73
32-598168r F 597 (68.2)   32-593579r 565 (69.4) 80
32-642986d* F 461 (68.6)   32-638510d 542 (68.3) 62
32-661708r   552 (64.7) 2b 32-657337r 404 (62.8) 62
32-726312r G 490 (66.9) 2b 32-722841r 453 (66.7) 83
32-734536r G 489 (68.5) 2b 32-731206r 556 (66.7) 73
32-752616r G 492 (67.9) 2b 32-749267r 540 (66.7) 78
32-755765r G 491 (68.8) 2b 32-752467r 553 (66.2) 75
32-769406r   441 (61.0)   32-766145r 569 (57.8) 69
32-772687r   425 (60.9)   32-769534r 408 (60.5) 80
32-775723r* H 265 (65.3)   32-772586rd 430 (66.5) 54
32-794401r H 603 (63.2) 2b 32-790497r 577 (62.9) 86
32-802492r H 550 (63.8) 2b 32-798632r 541 (64.5) 86
32-808837r H 550 (64.0) 2b 32-804952r 541 (64.7) 87
32-827594d H 591 (62.4) 2b 32-824177d 581 (63.0) 91
32-881720r I 570 (66.7) 2b 32-877913r 581 (65.4) 90
32-890515r I 573 (66.8) 2b 32-886987r 584 (65.2) 90
32-919839r J 623 (70.0)   32-916263r 502 (69.5) 74
32-937896d J 507 (70.6)   32-934324d 600 (69.7) 75
32-953057r J 623 (70.0)   32-949068r 600 (69.5) 88
32-991979r K 614 (65.3) 2b 32-988462r 594 (65.3) 86
32-1017837r K 614 (65.2) 2b 32-1014737r 594 (65.3) 85
32-1128071r   506 (63.4) 2b 32-1125938r 519 (62.0) 88
32-1141454r   404 (60.4)   32-1167639d 367 (61.6) 52
32-1172151d L 506 (67.8)   32-1169025dd 367 (70.6) 67
32-1195026d L 602 (66.5)   32-1191646d 618 (68.0) 87
32-1219109r L 602 (66.6)   32-1215657r 618 (67.8) 89
32-1284330d   458 (65.9) 2b 32-1278797d 559 (63.9) 74
32-1405232d   467 (64.9) 2b 32-1399746d 468 (63.9) 74
32-1496187d M 497 (66.4) 2a 32-1509833d 411 (66.4) 60
32-1532945d* M 365 (68.2)   32-1546424d 409 (65.8) 79
32-1545347d   513 (61.6) 2b 32-1558844d 457 (62.1) 68
  1. aThe elements are named with the chromosome number (i.e., 32) and the position in the chromosome, according to the contig LinJ32_20070420_V3 sequence; d and r denote that the element is located in the plus or minus DNA strand, respectively. The indicated nucleotide corresponds to either the start or end of the element, depending on its location in the plus or minus DNA strand, respectively.
  2. bThe presence of significant BLASTN matches with the "79-bp signature" LmSIDER2a (2a) or LmSIDER2b (2b) is indicated.
  3. cThe elements are named with the chromosome number (i.e., 32) and the position according to the contig LmjF32_01_20050601_V5.2 sequence; d and r denote that the element is located on the plus or minus strand, respectively.
  4. *Truncated element.