Skip to main content

Table 2 SIDER elements present in the L. infantum chromosome 20

From: The SIDER2 elements, interspersed repeated sequences that populate the Leishmania genomes, constitute subfamilies showing chromosomal proximity relationship

Namea Subfamily Size (%GC) 79-bp signatureb
20-315r N 477 (66.3) 2b
20-9815r N 554 (66.3) 2b
20-26129r N 526 (65.8) 2b
20-38171r* N 356 (67.4)  
20-104446d O 576 (65.8) 2a
20-112062r O 571 (65.5) 2a
20-121152d* O 425 (65.2)  
20-133376d O 661 (64.2) 2a
20-172973d O 651 (64.7) 2a
20-208609r   384 (63.8) 2b
20-248078r   378 (61.4) 2b
20-334521d   221 (58.8)  
20-418908d   466 (65.7) 2a
20-432767r P 561 (65.4)  
20-441039d P 592 (65.0)  
20-449285d P 603 (65.2)  
20-483061r Q 466 (67.4)  
20-510191r* Q 253 (70.0)  
20-512317d R 451 (66.3) 2b
20-517565r Q 334 (71.9)  
20-520085d R 444 (66.4) 2b
20-543749d R 455 (65.5) 2b
20-550589d R 455 (65.5) 2b
20-575257d Q 468 (68.6) 2b
20-609548d S 1270 (70.0)  
20-616384d S 1270 (69.8)  
20-716639r   556 (58.6)  
  1. aThe elements are named with the chromosome number (i.e., 32) and the position in the chromosome, according to the contig LinJ20_20070420_V3 sequence; d and r denote that the element is located in the plus or minus DNA strand, respectively.
  2. bThe presence of significant BLASTN matches with the "79-bp signature" LmSIDER2a (2a) or LmSIDER2b (2b) is indicated.
  3. *Truncated element.