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Table 2 Classification of Genes in RDs.

From: Comparative genomic profiling of Dutch clinical Bordetella pertussis isolates using DNA microarrays: Identification of genes absent from epidemic strains

Gene class

RD-3

RD-5

RD-6

RD-27

RD-10

RD-28

RD-29

RD-18

RD-1*

Tot in RD

Tohama I

% in RD

Amino acid biosynthesis

     

1

   

1

135

4%

Biosynthesis of cofactors, prosthetic groups, and carriers

  

1

 

1

    

2

109

3%

Cell envelope

4

1

3

 

1

 

2

  

11

505

13%

Cellular Processes

  

1

   

1

1

 

3

169

4%

Central Intermediary metabolism

1

 

1

 

1

    

3

174

5%

DNA Metabolism

      

2

  

2

123

3%

Energy Metabolism

1

 

1

 

4

    

6

429

11%

Hypothetical proteins

5

 

2

1

1

 

2

2

2

15

260

5%

Mobile and extrachromosomal element functions

    

1

    

1

52

1%

Protein synthesis

 

1

       

1

186

5%

Regulatory funcions

3

 

2

 

1

 

2

  

8

322

8%

Transport and binding

2

3

  

4

1

3

1

 

14

327

9%

Unclassified

7

2

8

 

5

 

5

5

 

32

940

25%

(pseudogenes)

4 (17%)

2 (28%)

1 (5.2%)

 

5 (26%)

2 (100%)

3 (17.6%)

1 (11%)

 

18 (18%)

368

10%

Total nr of genes in RD

23

7

19

1

19

2

17

9

2

99

3731

 
  1. The number of genes belonging to COG classes is indicated for each RD, for all RDs combined (Tot in RD) and for Tohama I [26]. In the last column the % of each class present in all RDs relative to Tohama I is indicated.
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BMC Genomics

ISSN: 1471-2164

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