Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: A three factor design

BMC Genomics

Table 5 Transcription factor target set enrichment results

TFs	Log10(p-value)	Overlap	Set1	Set2	Background
Harbison et al. (YPD), p < 0.01
FHL1	-28.44	42	114	213	5636
RAP1	-16.52	42	114	414	5636
GAT3	-9.68	23	114	179	5636
SMP1	-4.45	17	114	180	5636
YAP5	-4.1	16	114	168	5636
PDR1	-3.48	15	114	164	5636
Harbison et al. (Other), p < 0.01
FHL1 (rapa)	-27.96	42	114	220	5636
FHL1 (sm)	-24.83	44	114	294	5636
FHL1 (H₂O₂-Hi)	-16.35	30	114	189	5636
RAP1 (sm)	-13.11	37	114	392	5636
SFP1 (sm)	-8.44	18	114	118	5636
Beyer et al. SLL > 4
FHL1	-27.43	51	114	379	5636
RAP1	-20.29	34	114	196	5636
SFP1	-18.9	28	114	129	5636
STB4	-17.91	29	114	153	5636
SWI6	-16	42	114	430	5636
YAP6	-15.16	32	114	242	5636
YAP1	-14.47	35	114	314	5636
ACE2	-10.97	32	114	335	5636
BAS1	-10.64	22	114	147	5636

Target sets defined by Harbison et al. [21] chIP-chip study. p-values < 0.01 for YPD and other growth conditions are indicated (rapa: rapamycin, sm: sulfometuron methyl, H₂O₂-Hi, hydrogen peroxide 4 mM). Sets were also analyzed for Beyer et al. [20] derived target sets using sum of log-likelihood (SSL) > 4.

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