Table 1 Selected significantly affected genes with known functions.
From: Gene expression patterns of sulfur starvation in Synechocystis sp. PCC 6803
Cluster | Selected constituent genes |
|---|---|
1 | slr1933(rfbC), sll0398(dgt), slr1224(malK) |
2 | sll0336(accD), sll1129(todF), sll0535(clpX) |
4 | Phycobilisome degradation protein NblA (ssl0452 and ssl0453), sll1869(cbaB), Sulfate transport system (slr1452(sbpA), slr1453(cysT), slr1454(cysW), slr1455(cysA)) |
6 | sll1165(mutS), slr1511(fabH), sll1076(ziaA) |
7 | sll0306(rpoD), slr0074(ycf24) |
9 | sll1459, sll1621, slr0143, slr1041, slr0537, sll0856(rpoE), slr0853(rimI) CO2 fixation slr0436(ccmK), Soluble electron carriers sll1245(cytM) |
10 | sll1958(hisC), slr1129(rne), slr0918(pepM) |
11 | ssl0546(minE), sll1635 |
12 | sll1363(ilvC), slr1756(glnA), slr0623(trxA), slr1622(ppa), sll1070(tktA) ATP synthase (sll1321(atp1), sll1322(atpI), sll1324(atpF), sll1325(atpD), sll1326(atpA), slr1329(atpB), ssl2615(atpH)), CO2 fixation (sll1028(ccmK), slr0009(rbcL)), Cytochrome b6/f complex (sll1317(petA), slr0342(petB)), Translation (sll0517(rbpA), sll1098(fus)), Ribosomal proteins (sll1744 (rpl1), sll1746 (rpl12), sll1807 (rpl24), sll1808 (rpl5), sll1809 (rps8), sll1810 (rpl6), sll1813 (rpl15), ssl1426 (rpl35)) |
13 | RNA polymerase subunits (sll1787(rpoB), sll1789(rpoC2), sll1818(rpoA)), Translation (sll1820(truA), sll1099(tufA), Ribosomal proteins (sll0767(rpl20), sll1745(rpl10), sll1799(rpl3), sll1801(rpl23), sll1802(rpl2), sll1803(rpl22), sll1804(rpl3), sll1805(rpl16), sll1806(rpl14), sll1812(rps5), sll1817(rps11), sll1819(rpl17), sll1821(rpl13), sll1822(rps9), ssl0601(rps21), ssl3432(rps19), ssl3436(rpl29)) |
14 | Translation (ssr1480, ssl3441 (infA), Ribosomal protein ssr2799 (rpl27)) |
15 | sll1184(ho1), slr0444(aroA), slr1176(agp), sll0807(cfxE), slr1545(rpoE), Cytochrome b6/f complex subunit smr0003(petM), Photosystem I (smr0005(psaM), ssl0563(psaC)), Photosystem II (sll1867(psbA3), sml0001(psbI), sml0002(psbX), sml0005(psbK), smr0001(psbT), smr0007(psbL), smr0008(psbJ), ssl2598(psbH)), Phycobilisome (sll1578(cpcA), slr2051(apcG)) |
16 | sll1626(lexA), slr0165(clpP), sll0947(lrtA), CO2 fixation slr0012(rbcS), Cytochrome b6/f complex slr0343(petD), Photosystem I (sll0819(psaF), slr0737(psaD), slr1655(psaL), slr1834(psaA), slr1835(psaB), sml0008(psaJ)), Photosystem II (sll0258(psbV), sll0427(psbO), sll0849(psbD), sll0851(psbC), slr0906(psbB), slr0927(psbD2), slr1311(psbA2), smr0006(psbF), ssr3451(psbE)), Phycobilisome (sll1577(cpcB), sll1579(cpcC), slr0335(apcE), slr1459(apcF), slr1986(apcB), slr2067(apcA), ssr3383(apcC)), Soluble electron carriers (sll0199(petE), ssl0020(petF)) |
18 | slr1562(grxC), sll0018(cbbA) |
19 | slr0164(clpP), Cytochrome b6/f complex slr1185(petC), slr1828(petF), Ribosomal proteins (sll1816(rps13), slr1984(rps1), sml0006(rpl36), ssl3437(rps17), ssl3445(rpl31), ssr0482(rps16)) |
20 | slr2075(groES), Ribosomal proteins (sll1824, slr0628(rps14), ssl2233(rps20)) |