Table 9 Genes and conditions used for the graph in Figure 6.
From: Selective inhibition of yeast regulons by daunorubicin: A transcriptome-wide analysis
Gly genes | rpg genes | rpg genes | Experiments/conditions | ||
|---|---|---|---|---|---|
ADH1 | RPL10 | RPL6A | DNA damage a | Osmotic stress b | Oxidative stress b |
ADH2 | RPL11A | RPL6B | DES460 + 0.02% MMS - 120 min | 1M sorbitol - 120 min | 1 mM Menadione (10 min)redo |
ADH3 | RPL11B | RPL7A | DES460 + 0.02% MMS - 15 min | 1M sorbitol - 15 min | 1 mM Menadione (105 min) redo |
ADH5 | RPL12A | RPL7B | DES460 + 0.02% MMS - 30 min | 1M sorbitol - 30 min | 1 mM Menadione (120 min)redo |
CDC19 | RPL12B | RPL8A | DES460 + 0.02% MMS - 5 min | 1M sorbitol - 45 min | 1 mM Menadione (160 min) redo |
ENO1 | RPL13A | RPL8B | DES460 + 0.02% MMS - 60 min | 1M sorbitol - 5 min | 1 mM Menadione (20 min) redo |
ENO2 | RPL13B | RPL9A | DES460 + 0.02% MMS - 90 min | 1M sorbitol - 60 min | 1 mM Menadione (30 min) redo |
FBA1 | RPL14B | RPL9B | DES460 + 0.2% MMS - 45 min | 1M sorbitol - 90 min | 1 mM Menadione (50 min)redo |
GLK1 | RPL15B | RPS0A | wt_plus_gamma_10_min | Hypo-osmotic shock - 15 min | 1 mM Menadione (80 min) redo |
GPM1 | RPL16A | RPS0B | wt_plus_gamma_120_min | Hypo-osmotic shock - 30 min | 1.5 mM diamide (10 min) |
GPM2 | RPL16B | RPS10A | wt_plus_gamma_20_min | Hypo-osmotic shock - 45 min | 1.5 mM diamide (20 min) |
GPM3 | RPL17A | RPS10B | wt_plus_gamma_30_min | Hypo-osmotic shock - 5 min | 1.5 mM diamide (30 min) |
HXK1 | RPL17B | RPS11A | wt_plus_gamma_45_min | Hypo-osmotic shock - 60 min | 1.5 mM diamide (40 min) |
HXK2 | RPL18A | RPS11B | wt_plus_gamma_5_min | 1.5 mM diamide (5 min) | |
LAT1 | RPL18B | RPS12 | wt_plus_gamma_60_min | AA/N starvation b | 1.5 mM diamide (50 min) |
PDA1 | RPL19A | RPS13 | wt_plus_gamma_90_min | aa starv 0.5 h | 1.5 mM diamide (60 min) |
PDB1 | RPL19B | RPS14A | aa starv 1 h | 1.5 mM diamide (90 min) | |
PDC1 | RPL1A | RPS14B | aa starv 2 h | 1 mM Menadione (40 min) redo | |
PDC5 | RPL1B | RPS15 | Temperature b | aa starv 4 h | 2.5 mM DTT 005 min dtt-1 |
PDX1 | RPL20A | RPS16A | 17 deg growth ct-1 | aa starv 6 h | 2.5 mM DTT 015 min dtt-1 |
PFK1 | RPL20B | RPS16B | 21 deg growth ct-1 | Nitrogen Depletion 1 d | 2.5 mM DTT 030 min dtt-1 |
PFK2 | RPL21A | RPS17A | 25 deg growth ct-1 | Nitrogen Depletion 1 h | 2.5 mM DTT 045 min dtt-1 |
PGI1 | RPL21B | RPS17B | 29 deg growth ct-1 | Nitrogen Depletion 12 h | 2.5 mM DTT 060 min dtt-1 |
PGK1 | RPL22A | RPS18A | 29C to 33C - 15 minutes | Nitrogen Depletion 2 d | 2.5 mM DTT 090 min dtt-1 |
PGM1 | RPL22B | RPS18B | 29C to 33C - 30 minutes | Nitrogen Depletion 2 h | 2.5 mM DTT 120 min dtt-1 |
PGM2 | RPL23A | RPS19A | 29C to 33C - 5 minutes | Nitrogen Depletion 3 d | 2.5 mM DTT 180 min dtt-1 |
STO1 | RPL23B | RPS19B | 33C vs. 30C - 90 minutes | Nitrogen Depletion 30 min. | constant 0.32 mM H2O2 (10 min) redo |
TDH1 | RPL24A | RPS1A | 37 deg growth ct-1 | Nitrogen Depletion 4 h | constant 0.32 mM H2O2 (100 min) redo |
TDH2 | RPL24B | RPS1B | DBY7286 37 degree heat - 20 min | Nitrogen Depletion 5 d | constant 0.32 mM H2O2 (120 min) redo |
TDH3 | RPL25 | RPS2 | DBYmsn2/4 (real strain) + 37 degrees (20 min) | Nitrogen Depletion 8 h | constant 0.32 mM H2O2 (160 min) redo |
TPI1 | RPL26A | RPS20 | DBYmsn2-4- 37 degree heat - 20 min | constant 0.32 mM H2O2 (20 min) redo | |
TYE7 | RPL26B | RPS21A | Heat Shock 005 minutes hs-2 | Stationary phase b | constant 0.32 mM H2O2 (30 min) redo |
RPL27A | RPS22A | Heat Shock 015 minutes hs-2 | YPD 1 d ypd-2 | constant 0.32 mM H2O2 (40 min) rescan | |
RPL27B | RPS22B | Heat Shock 030inutes hs-2 | YPD 10 h ypd-2 | constant 0.32 mM H2O2 (50 min) redo | |
RPL28 | RPS23A | Heat Shock 05 minutes hs-1 | YPD 12 h ypd-2 | constant 0.32 mM H2O2 (60 min) redo | |
RPL2A | RPS23B | Heat Shock 060 minutes hs-2 | YPD 2 d ypd-2 | constant 0.32 mM H2O2 (80 min) redo | |
RPL3 | RPS24A | Heat Shock 10 minutes hs-1 | YPD 2 h ypd-2 | DBY7286 + 0.3 mM H2O2 (20 min) | |
RPL30 | RPS24B | Heat Shock 15 minutes hs-1 | YPD 3 d ypd-2 | DBYmsn2/4 (real strain) + 0.32 mM H2O2 (20 min) | |
RPL31A | RPS25A | heat shock 17 to 37, 20 minutes | YPD 4 h ypd-2 | DBYmsn2msn4 (good strain) + 0.32 mM H2O2 | |
RPL31B | RPS25B | Heat Shock 20 minutes hs-1 | YPD 5 d ypd-2 | dtt 000 min dtt-2 | |
RPL32 | RPS26A | heat shock 21 to 37, 20 minutes | YPD 6 h ypd-2 | dtt 015 min dtt-2 | |
RPL33A | RPS26B | heat shock 25 to 37, 20 minutes | YPD 8 h ypd-2 | dtt 030 min dtt-2 | |
RPL33B | RPS27A | heat shock 29 to 37, 20 minutes | YPD stationary phase 1 d ypd-1 | dtt 060 min dtt-2 | |
RPL34B | RPS27B | Heat Shock 30 minutes hs-1 | YPD stationary phase 12 h ypd-1 | dtt 120 min dtt-2 | |
RPL35A | RPS28A | heat shock 33 to 37, 20 minutes | YPD stationary phase 13 d ypd-1 | dtt 240 min dtt-2 | |
RPL35B | RPS28B | Heat Shock 40 minutes hs-1 | YPD stationary phase 2 d ypd-1 | dtt 480 min dtt-2 | |
RPL36A | RPS29A | Heat Shock 60 minutes hs-1 | YPD stationary phase 2 h ypd-1 | ||
RPL37A | RPS29B | Heat Shock 80 minutes hs-1 | YPD stationary phase 22 d ypd-1 | ||
RPL37B | RPS3 | steady state 15 dec C ct-2 | YPD stationary phase 28 d ypd-1 | ||
RPL38 | RPS30A | steady state 17 dec C ct-2 | YPD stationary phase 3 d ypd-1 | ||
RPL39 | RPS30B | steady state 21 dec C ct-2 | YPD stationary phase 4 h ypd-1 | ||
RPL40A | RPS31 | steady state 25 dec C ct-2 | YPD stationary phase 5 d ypd-1 | ||
RPL40B | RPS4A | steady state 29 dec C ct-2 | YPD stationary phase 7 d ypd-1 | ||
RPL41A | RPS4B | steady state 33 dec C ct-2 | YPD stationary phase 8 h ypd-1 | ||
RPL42A | RPS6A | steady state 36 dec C ct-2 | |||
RPL42B | RPS6B | steady state 36 dec C ct-2 (repeat hyb) | |||
RPL43A | RPS7A | ||||
RPL43B | RPS7B | ||||
RPL4A | RPS8A | ||||
RPL4B | RPS8B | ||||
RPL5 | RPS9A | ||||
RPS9B | |||||