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Table 3 Other small RNAs and cis-regulatory RNA elements detected in the chromosome of S. meliloti 1021 by the global scoring procedure.

From: Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011

Prediction Rfam1 IgR coordinates upstream ORF2 RNA element2 downstream ORF2 GS3 Ref.
RNAseP RNA y 2356367–2357249 SMc01857< < SMc01856< 168 [73]
FMN riboswitch y 2398059–2398373 SMc01608> > ribH2 (SMc01609)> 127 [67]
4.5S RNA (SRP) y 259823–260123 SMc02904< > dnaX> 41 [67]
Glycine riboswitch y 1674762–1675635 gcvT< < SMc01242> 37 [67]
ssrA (tmRNA) n 2290955–2291142 SMc01449< > SMc01450> 33 [23]
smrC45 (speF) y 3105052–3105637 SMc02983< < SMc02984> 27 [65]
Thiamine riboswitch y 3532759–3533026 SMc03868< > SMc03869> 19 [67]
ilvIH cis regulatory n 2276530-2276876 SMc01431 (ilvIH)< < SMc01432> 16 [74]
Cobalamin riboswitch y 1999510–1999806 SMc00166< < SMc00165< 16 [67]
Cobalamin riboswitch n 2122378–2123250 SMc04305 (cobPW)< < SMc04306> 14 [67]
Cobalamin riboswitch y 954440–955076 SMc00983< > SMc00982> 11 [67]
ybhL cis regulatory y 3505880–3506125 SMc03838> > SMc03839> 3 [65]
serC cis regulatory y 2938993–2939230 serC< < SMc00639< 2 [65]
Methionine riboswitch y 3461713–3461838 SMc03796> > metA> - [65]
Methionine riboswitch y 580068–580264 metZ< < SMc02218> - [65]
  1. 1 RNA gene or element present (y) or absent (n) in Rfam database.
  2. 2 The transcribed strand is indicated.
  3. 3 global score (GS) calculated for the element in our predictive procedure (Figure 3).