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Table 3 Repetitive DNA in Citrus clementina BESs identified by Repeat Masker

From: Development of genomic resources for Citrus clementina: Characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequences

  Number of elements Length (bp) Sequence (%) Number of elements (%)
Retroelements     
   LINEs     
L1/CIN4 360 67,719 0.237% 3.74%
   LTR elements     
Ty1/Copia 3,770 1,142,096 3.999% 39.20%
Gypsy/DIRS1 3,917 1,172,005 4.103% 40.73%
   Other 265 6,939 0.024% 2.76%
   Total Retroelements 8,312 2,388,759 8.363% 86.42%
DNA transposons     
   hobo-Activator 346 64,065 0.224% 3.60%
   Tc1-IS630-Pogo 97 10,162 0.036% 1.01%
   En-Spm 381 55,814 0.195% 3.96%
   MuDR-IS905 386 29,983 0.105% 4.01%
   Tourist/Harbinger 13 1,400 0.005% 0.14%
   Other 83 5,653 0.020% 0.86%
   Total DNA transposons 1,306 167,077 0.585% 13.58%
Total interspersed repeats 9,618 2,555,836 8.948%