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Table 2 Expression profiles of the 25 Arabidopsis genes most significantly differentially regulated.

From: Differential SAGE analysis in Arabidopsis uncovers increased transcriptome complexity in response to low temperature

AGI

Control

30 min

2 hours

2 days

1 week

p-value

Annotation

At2g34420

339

1023

247

317

35

4.50e-249

chlorophyll A-B binding protein/LHCII type I (LHB1B2)

At4g12470

30

82

12

77

580

2.61e-244

protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

At2g42540

2

0

1

19

274

1.22e-185

cold-regulated protein (cor15a)

At3g22840

10

0

0

109

318

1.66e-164

chlorophyll A-B binding family protein/early light-induced protein (ELIP)

At4g12480

8

16

6

12

276

1.41e-156

protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

At5g13930

6

4

7

256

84

6.82e-130

chalcone synthase

AtCg00480

51

362

78

49

19

4.97e-126

chloroplast-encoded gene for beta subunit of ATP synthase

At3g50450

55

244

24

48

41

3.48e-75

hypersensitive response protein (HR1)

At3g16770

27

178

15

15

10

3.02e-74

ERF/AP2 transcription factor RAP2.3

At1g30380

413

123

398

327

49

8.89e-69

PSI reaction center subunit psaK

At4g14690

2

0

4

131

87

5.05e-67

chlorophyll A-B binding family protein/early light-induced protein

At3g51600

97

42

22

42

262

8.67e-66

nonspecific lipid transfer protein 5

At5g14740

330

61

197

107

44

1.29e-64

carbonic anhydrase 2

At5g66570

476

118

341

239

134

4.80e-63

oxygen-evolving enhancer protein 1

At3g50990

453

260

581

449

82

3.95e-62

Similar to peroxidase ATP6a

At1g20620

124

280

71

49

56

1.75e-58

catalase 3 (SEN2)

At1g15820

205

43

272

160

25

1.90e-55

chlorophyll A-B binding protein, chloroplast (LHCB6)

At2g05100

207

102

46

16

25

1.86e-48

chlorophyll A-B binding protein/LHCII type II (LHCB2.1) (LHCB2.3)

At5g02960

80

27

70

80

253

2.47e-48

40S ribosomal protein S23 (RPS23B)

At1g31330

24

134

22

20

6

4.83e-46

PSI reaction center subunit III family protein

At3g09390

85

73

162

276

305

1.35e-45

metallothionein protein

At2g42530

3

0

11

45

107

5.28e-45

cold-regulated protein (cor15b)

At4g38970

333

58

229

178

199

1.18e-42

fructose-bisphosphate aldolase

At1g29910

591

404

559

494

131

2.66e-41

chlorophyll A-B binding protein 2

At3g47470

144

49

248

125

43

2.87e-40

chlorophyll A-B binding protein 4

  1. For each Arabidopsis gene the observed SAGE tag abundance for each library is shown. The total tags were normalised to 50,000 per library to facilitate comparative expression analysis.