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Table 3 Best hits for the MURF1 profile HMM when searched against the profile HMMs of all NADH dehydrogenase subunits using HHsearch. The hits are ranked based on E-valuesa

From: Unassigned MURF1 of kinetoplastids codes for NADH dehydrogenase subunit 2

No

Hitb

Probability

E-value

Identities

Score

1

NAD2_0.45

96.6

2.70E-15

26

75.7

2

NAD2_0.4

96.6

3.20E-15

25

75.3

3

NAD2_0.5

96.6

1.70E-14

23

72.1

4

NAD2_0.55

96.5

1.50E-12

34

63.1

5

NAD2_0.6

96.3

6.30E-12

23

60.4

6

NAD2_0.65

96.2

1.00E-11

26

59.4

7

NAD4_0.4

96

2.10E-11

21

58

8

NAD4_0.55

95.9

2.90E-11

23

57.4

9

NAD4_0.6

95.2

1.40E-10

28

54.2

10

NAD2_0.7

95.1

1.90E-10

27

53.6

11

NAD4_0.7

95

2.40E-10

28

53.2

12

NAD4_0.5

94.3

6.00E-10

28

51.4

13

NAD2_0.75

93.8

1.20E-09

24

50

14

NAD4_0.45

93.2

2.00E-09

27

49

15

NAD4_0.75

93.1

2.30E-09

28

48.7

16

NAD6_0.4

91.8

6.40E-09

24

46.7

17

NAD6_0.45

90.1

1.80E-08

26

44.7

18

NAD5_0.4

89.8

2.10E-08

21

44.4

19

NAD1_0.55

88.9

3.30E-08

18

43.5

20

NAD6_0.5

88.9

3.30E-08

23

43.5

21

NAD5_0.5

88.4

4.00E-08

28

43.1

22

NAD1_0.6

86.7

8.10E-08

17

41.7

23

NAD1_0.5

86

1.10E-07

18

41.2

24

NAD6_0.55

85.7

1.20E-07

25

41

25

NAD5_0.55

85.7

1.20E-07

25

40.9

26

NAD1_0.65

84.8

1.60E-07

20

40.4

27

NAD1_0.4

84.3

1.80E-07

24

40.1

28

NAD1_0.45

84.1

2.00E-07

22

40

29

NAD4_0.65

83.5

2.40E-07

26

39.6

30

NAD1_0.7

83.2

2.60E-07

21

39.4

31

NAD5_0.45

25

2.90E-07

25

39.2

32

NAD5_0.6

80.4

5.50E-07

21

37.9

33

NAD6_0.65

80

6.10E-07

28

37.7

34

NAD1_0.75

79.5

6.90E-07

18

37.5

35

NAD5_0.65

77.3

1.10E-06

18

36.5

36

NAD5_0.75

76.9

1.20E-06

21

36.3

37

NAD5_0.7

76.7

1.30E-06

18

36.2

38

NAD6_0.6

73.6

2.40E-06

25

35

39

NAD6_0.7

69.8

4.70E-06

25

33.7

40

NAD6_0.75

69.2

5.20E-06

20

33.5

41

NAD3_0.4

62.1

1.50E-05

30

31.4

42

NAD3_0.45

55.9

3.50E-05

27

29.8

43

NAD3_0.55

48.2

8.80E-05

25

27.9

44

NAD3_0.6

46.9

0.0001

24

27.6

45

NAD3_0.65

45.8

0.00012

23

27.4

46

NAD3_0.5

43.9

0.00014

21

27

47

NAD4L_0.4

34.2

0.00044

25

24.8

48

NAD4L_0.45

31.2

0.00062

18

24.1

49

NAD4L_0.55

26.8

0.0011

15

23

50

NAD3_0.7

26.7

0.0011

26

23

51

NAD4L_0.6

26.5

0.0011

30

22.9

52

NAD4L_0.7

23.3

0.0016

27

22.1

53

NAD4L_0.5

21.1

0.0022

18

21.6

  1. a Probability, e-value, identity and score for each hit were reported by HHSearch
  2. b The number following the subunit name is the sequence identity threshold used for clustering the sequences from which we generate the profile HMM. For example, NAD2_0.45 profile HMM is generated by clustering all known NAD2 sequences at 45% sequence identity threshold using CD-HIT.
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