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Table 1 Gene pairs in human genome that share most 5' exons and promoters with little coding similarities

From: Promoter-sharing by different genes in human genome – CPNE1 and RBM12 gene pair as an example

Gene 1 Chr. Strand Gene 1 start * Gene 2 Gene 2 start Coexpression Correlation Coefficient P-value (**) Note
LEPOT 1 + 65658906 LEPR 65658905 -0.15 0.73 (103)  
KLHL23 2 + 170259246 PHOSPHO2 170259220 N/A N/A (0)  
NAT6 3 - 50308836 HYAL3 50305265 0.33 0.16 (103)  
TMED7 5 - 114977101 TICAM2 114942246 0.56 0.04 (105)  
ITGA1 5 + 52119892 PELO 52119530 0.42 0.09 (95)  
MUTED 6 - 7959212 TXNDC5 7826748 0.18 0.30 (107)  
HIST1H2AD 6 - 26306990 HIST1H3D 26304990 0.77 <0.01 (94) Little coding similarity
LOC552891 9 + 113433486 DNAJC25 113433483 N/A N/A (0) One is a fusion gene of two adjacent genes
TRIM6-TRIM34 11 + 5574461 TRIM6 5573922 N/A N/A One is a fusion gene of two adjacent genes
HOXC4 12 + 52696908 HOXC6 52696908 0.54 0.04 (103) some coding similarity; HOXC5 also shares exon 1 with these two genes
ANG 14 + 20222608 RNASE4 20222211 0.77 <0.01 (104)  
SPESP1 15 + 67009918 NOX5 67009917 0.17 0.32 (68)  
SULT1A4 16 + 29373901 GIYD2 29373375 N/A N/A (0)  
SULT1A3 16 + 30113243 GIYD1 30112717 N/A N/A (0) Duplication of the SULT1A4/GIYD2 pair
TNFSF12-TNFSF13 17 + 7393139 TNFSF12 7393098 N/A N/A (0) One is a fusion gene of two adjacent genes; structure conserved in mouse
NME1 17 + 46585918 NME1-NME2 46585918 N/A N/A (0) One is a fusion gene of two adjacent genes
NUP62 19 - 55101893 IL4I1 55084722 -0.11 0.68 (106)  
PEG3 19 - 62015614 ZIM2 61977731 0.34 0.14 (75)  
ADAT3 19 + 1856416 SCAMP4 1856372 N/A N/A (0)  
FASTKD5 20 - 3075164 UBOX5 3036218 -0.05 0.61 (105) Structure conserved in mouse
RBM12 20 - 33700290 CPNE1 33677379 0.47 0.06 (106) Structure conserved in mouse
BAGE 21 - 10079666 BAGE4 10042712 N/A N/A  
C22orf29 22 - 18213668 GNB1L 18155937 0.06 0.45 (104)  
ZBED1 X - 2414454 DHRSX 2147546 0.42 0.09 (103)  
  1. * chromosomal positions are based on NCBI human genome Build 36.3.
  2. ** refers to the number of experiments where both genes in that gene pair appeared together.