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Table 1 CsRn1-like retrotransposons of Anopheles gambiae isolated in this study

From: PwRn1, a novel Ty3/gypsy-like retrotransposon of Paragonimus westermani: molecular characters and its differentially preserved mobile potential according to host chromosomal polyploidy

Element Contig No. (nucleotide position)a Nucleotide lengths (bp) LTR identity (%) TSD Noted
   5'-/3'-LTR Full unit ORF1b ORF2b, c    
AgCR1 AAAB01008980 (3956962–3961632) 264/264 4671 978 2961 (0) 98.1 AAGC  
AgCR2 AAAB01008810 (41113–47019) 368/368 5907 978 3168 (0) 100 AACT GYPSY51AG
AgCR3 AAAB01008968 (1135463–1139639) 146/146 4177 756 3090 (-1) 100 AATG GYPSY50AG
AgCR4 AAAB01008984 (9436961–9442636) 356/356 5676 948 3135 (0) 100 AACT GYPSY70AG
AgCR5 AAAB01008831 (1206–6507) 202/202 5302 882 2993 (-1) 100 CGTC  
AgCR6 AAAB01008880 (20632–25306) 300/300 4675 888 3087 (0) 99.7 CACC GYPSY53AG
AgCR7 AAAB01008850 (51014–56635) 266/267 5622 876 2856 (-1) 97.3 AAGT  
AgCR8 AAAB01008888 (3231118–3237246) 394/394 6126 984 3249 (0) 100 GCAT GYPSY52AG
AgCR9 AAAB01008851 (1315535–1320623) 260/260 5089 915 2964 (-1) 100 GGTT  
AgCR10 AAAB01008869 (24283–30418) 319/316 6136 885 2991 (-1) 99.1 ATGT GYPSY49AG
AgCR11 AAAB01008957 (186235–192486) 407/407 6252 909 3081 (-1) 98.5 TATC  
AgCR12 AAAB01008964 (2714632–2720796) 370/370 6165 894 3084 (-1) 100 AGTT GYPSY48AG
AgCR13 AAAB01008849 (1694453–1699416) 219/206e 4964 933 2946 (-1) 99.5 AGGGe  
AgCR14 AAAB01008944 (738407–744580) 383/383 6174 984 2970 (-1) 100 ACCC  
  1. aContig sequence containing a representative copy is listed.
  2. bThe lengths of ORFs were estimated from each of the elements, after correcting the corrupted nucleotide sequences (see text).
  3. cNumber in parentheses indicates a shift in the reading frame of ORF2 compared to that of ORF1.
  4. dSynonymous names, as have been designated in a previous report [15].
  5. eNucleotides comprising the end of the 3'-LTR and TSD were deleted in the contig and thus, TSD sequence found at the 5'-flanking region was presented.