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Table 1 Numbers of differentially expressed genes between batches within a single experiment identified using ANOVA

From: Empirical Bayes accomodation of batch-effects in microarray data using identical replicate reference samples: application to RNA expression profiling of blood from Duchenne muscular dystrophy patients

Adjustment Method Cincinnati UC Davis Common
None 48 527 3
t-test filter 0 (of 273) 42 (of 273) 0
EB: between experiment only 96 545 8
EB: within experiment only 0 4 0
EB: within and between experiment 0 0 0
  1. Numbers are out of 54,675 probe sets unless otherwise specified. EB = empirical Bayes.