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Table 1 Real-time qPCR analyses

From: Local and systemic gene expression responses of Atlantic salmon (Salmo salar L.) to infection with the salmon louse (Lepeophtheirus salmonis)

Target

Primer sequence from 5' to 3'

Amplicon size (bp)

Accesion number

Matrix metalloproteinase 13

F CCAAAAAGAGGGCACCAGATGG

53

DW539943

 

R CCAAAAAGAGGGCACCAGATGG

  

Matrix metalloproteinase 9

F AGTCTACGGTAGCAGCAATGAAGGC

72

CA342769

 

R CGTCAAAGGTCTGGTAGGAGCGTAT

  

Cathepsin S

F CGAAGGGAGGTCTGGGAGAGGAAT

87

CA355014

 

R GCCCAGGTCATAGGTGTGCATGTC

  

Bone morphogenetic protein 4

F TCAAGTTGCCCATAGTCAGT

207

CA056395

 

R CACCTGAACTCTACCAACCA

  

Alkaline phosphatase

F CTAGTTTGGGTCGTGGTATGT

185

CA358635

 

R TGAGGGCATTCTTCAAAGTA

  

Heat shock protein 90β-20

F GAACCTCTGCAAGCTCATGAAGGA

72

CF752846

 

R ACCAGCCTGTTTGACACAGTCACCT

  

Collagen 10α

F TGGTGCTCTTTGACTGCCTGTAA

180

EG837148

 

R CATCCTGTGTGTTGCAATATCACA

  

Collagen 1α

F AGAGAGGAGTCATGGGACCCGTT

155

 
 

R GGGTCCTGGAAGTCCCTGGAAT

  

Collagen 2α

F TGGTCGTTCTGGAGAGACT

151

BX865386

 

R CCTCATGTACCTCAAGGGAT

  

Decorin

F GAACCTGGCTAAGCTGGGTCTAA

256

DQ452069

 

R GAACAGGCTGATGCCAGAGTACAT

  

Elastin

F GAGGCTACAGACCAGGAGGAGTT

226

BU694149

 

R TCTGGGTCGGTGGGTTTGTA

  

Laminin

F CATGTGACATGGACACAGGAA

273

DY722974

 

R CGTCCTCAGCCTCATAGGTGTA

  

CCAAT/enhancer binding protein β

F TACGTCCTGGGCTATCCTGAACTGC

140

CA348284

 

R CCAGACGAACCGTTGTTGTCCA

  

Erythroid 5-aminolevulinate synthas

F CACATGAGACAGCTGCTCCTGGAGA

121

DW580939

 

R GCTCCAGCAAGATGTCACACACCT

  

Heme oxygenase 1

F AGTCAGTGGAGAGAGACCTGGAGCA

117

CA363120

 

R GGTTGTCTTTGCCGATCTGTCTGAG

  

Haemoglobin beta chain

F ACAAACGTCAACATGGTCGACTGG

67

NM_001123666

 

R TCTTTCCCCACAGGCCTACGAT

  

Mannose binding lectin 1

F TCCATTGCACTGGGCGATGC

105

CA349943

 

R CACTGCTTCCACCTGAGCCTCA

  

Prostaglandin D synthase

F CCTACACCAACCTGAACGCTGATG

98

CA352578

 

R ACGCTGGCTGGTGAAGGTGAAG

  

MHC class II α chain

F AGTCAGGTGGACCAGGAACAATCA

96

CA379977

 

R CTGGAGAACTGGTTGAGGGTGAAA

  

CD8α

F CGTCTACAGCTGTGCATCAATCAA

266

AY693391

 

R GGCTGTGGTCATTGGTGTAGTC

  

IL-12β

F TCTACCTACACGACATTGTCCAGCC

62

AJ548830

 

R ATCCATCACCTGGCACTTCATCC

  

Arginase 1

F AGCCATGCGTATCAGCCAA

122

EG929369

 

AAGGCGATCCACCTCAGTCA

  

Programmed death ligand 1

F TCAACGACTCTGGGGTGTACCGATG

133

CA366631

 

R TCCACCTCATCTCCACCACGTCTC

  

Beta-2-microglobulin

F TCGTTGTACTTGTGCTCATTTACAGC

107

AF180478

 

R CAGGGTATTCTTATCTCCAAAGTTGC

  

TGF-β

F AATCGGAGAGTTGCTGTGTGCGA

332

EU082211+

 

R GGGTTGTGGTGCTTATACAGAGCCA

 

AJ007836

IL-1 receptor type 1

F CCAAAAAGAGGGCACCAGATGG

126

NM_001123633

 

R CGTATCGTCTCTCCAACACCTCAGG

  

CD4

F TGCATTGTTCCTCTCTTCCACAGC

128

EG852912

 

R CCGTCCCAAGGTACCATAGTACCAA

  

IL-10

F ATGAGGCTAATGACGAGCTGGAGA

54

EF165028

 

R GGTGTAGAATGCCTTCGTCCAACA

  

Eukaryotic translation initiation factor 3 subunit 6

F GTCGCCGTACCAGCAGGTGATT

92

CX040383

 

R CGTGGGCCATCTTCTTCTCGA

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