Skip to main content

Advertisement

Table 2 Overview of transcripts in livers of rainbow trout significantly affected by the dietary treatment (HE vs LE diet)1

From: Changes induced by dietary energy intake and divergent selection for muscle fat content in rainbow trout (Oncorhynchus mykiss), assessed by transcriptome and proteome analysis of the liver

Statistical analysis ANOVA (p < 0.01) SAM FDR ≤ 0.15 ANOVA∩SAM
Total 165 111 106
HE > LE 37 8 8
HE < LE 128 103 98
Number of transcripts with known biological function 132 87 83
Biological function    
Metabolism 52 (39.4%) 38 (43.7%) 37 (44.6%)
   Lipid 19 (14.4%) 15 (17.2%) 15 (18.1%)
   Energy 7 (5.3%) 5 (5.7%) 5 (6.0%)
   Carbohydrate 1 (< 1%) 1 (1.1%) 1 (1.2%))
   Amino acid and derivative 5 (3.8%) 3 (3.4%) 3 (3.6%)
   Protein folding/synthesis/breakdown 11 (8.3%) 6 (6.9%) 6 (7.2%)
   Xenobiotic and oxidant metabolism 5 (3.8%) 4 (4.6%) 4 (4.8%)
   Purine and pyrimidine 4 (3%) 4 (4.6%) 3 (3.6%)
Transcription/translation 21 (15.9%) 13 (15.1%) 12 (14.5%)
Cell cycle 13 (9.8%) 6 (6.9%) 6 (7.2%)
Trafficking 9 (6.8%) 6 (6.9%) 6 (7.2%)
Signal transduction 8 (6.1%) 7 (8.0%) 7 (8.4%)
Extracellular matrix and structural components 6 (4.5%) 5 (5.7%) 5 (6%)
Immune and stress response 6 (4.5%) 5 (5.7%) 4 (4.8%)
Others 17 (12.9%) 7 (8.0%) 6 (7.2%)
  1. 1 According to ANOVA (p < 0.01), SAM analysis (FDR < 0.15) and both statistical methods