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Table 1 Genomic data used in this work.

From: Multiple genome alignment for identifying the core structure among moderately related microbial genomes

Bacillaceae Group Abbrev. Accession No. CDS GC%
Bacillus subtilis 168 1* B. sub (bsu) NC_000964.2 4105 43.5
Bacillus licheniformis ATCC 14580 1 B. lic (bli) NC_006270.2 4152 46.2
Bacillus halodurans C-125   B. hal (bha) NC_002570.2 4066 43.7
Bacillus clausii KSM-K16   B. cla (bcl) NC_006582.1 4096 44.8
Bacillus anthracis Ames 2* B. ant (ban) NC_003997.3 5311 35.4
Bacillus cereus 14579 2 B. cer (bce) NC_004722.1 5234 35.3
Geobacillus kaustophilus HTA426   G. kau (gka) NC_006510.1 3498 52.0
Oceanobacillus iheyensis HTE831   O. ihe (oih) NC_004193.1 3500 35.7
(outgroup)      
Staphylococcus aureus N315   S. aur (sau) NC_002745.2 2588 32.8
Enterobacteriaceae      
Escherichia coli K-12 3* E. col (eco) NC_000913.2 4131 50.8
Salmonella enterica CT18 3 S. ent (sty) NC_003198.1 4395 51.9
Enterobacter sp. 638 3 Enter (ent) NC_009436.1 4115 52.9
Erwinia carotovora SCR11043   E. car (eca) NC_004547.2 4472 51.0
Photorhabdus luminescens TTO1   P. lum (plu) NC_005126.1 4683 42.8
Sodalis glossinidius 2516   S. glo (sgl) NC_007712.1 2432 54.5
Serratia proteamaculans 568   S. pro (spe) NC_009832.1 4891 55.0
Yersinia pestis CO92   Y. pes (ype) NC_003143.1 3885 47.6
(outgroup)      
Vibrio cholerae N16961   V. cho (vch) NC_002506.1
NC_002505.1
3835 47.5
  1. In the Group column, organisms with the same number are those considered to be so close that they are counted only once; organisms with an asterisk are representative genomes for each of the closely related genome groups, which were used in the robustness test and the phylogenetic congruence test. In the Abbrev column, the abbreviated names used in this paper are shown in italic; the names in parentheses are the abbreviated names used in KEGG and MBGD.