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Table 1 Affymetrix 500 K using CEU HapMap Samples

From: Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies

  Affymetrix 500,000 SNP Panel (CEU)
Chromosome Total number of SNPs Total number of blocks Total number Interblock SNPS Total number of blocks + Interblock SNPs
1 31876 4447 833 5280
2 33610 4626 787 5413
3 27588 3903 723 4626
4 25811 3514 689 4203
5 26548 3601 646 4247
6 26550 3487 604 4091
7 21544 3061 618 3679
8 22550 3053 563 3616
9 19086 2664 541 3205
10 23531 3046 510 3556
11 21477 2761 528 3289
12 20549 2821 499 3320
13 15700 2116 392 2508
14 12839 1820 371 2191
15 11560 1857 396 2253
16 12339 1944 454 2398
17 8473 1385 344 1729
18 11966 1748 374 2122
19 5177 954 305 1259
20 10292 1519 331 1850
21 5873 843 204 1047
22 5053 828 213 1041
Total 399,992 55,998 10,925 66,923