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Table 2 Illumina 317 K SNPs using CEU HapMap Samples

From: Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies

 

Illumina 317,000 SNP Panel (CEU)

Chromosome

Total number of SNPs

Total number of blocks

Total number Interblock SNPS

Total number of blocks + Interblock SNPs

1

23055

4959

1336

6295

2

25103

5258

1348

6606

3

21332

4505

1268

5773

4

18923

3979

1055

5034

5

19062

3966

979

4945

6

20524

4044

950

4994

7

16493

3472

977

4449

8

18053

3658

940

4598

9

15691

3305

936

4241

10

15423

3263

899

4162

11

14498

3037

827

3864

12

14844

3097

918

4015

13

11411

2373

620

2993

14

9767

2086

592

2678

15

8817

1942

631

2573

16

8924

2078

705

2783

17

8279

1859

603

2462

18

10390

2183

678

2861

19

5833

1408

545

1953

20

7758

1736

496

2232

21

5430

1130

318

1448

22

5398

1156

379

1535

Total

305,008

64,494

18,000

82,494