Table 2 Transcripts where 97% of the variance in gene expression is explained by growth conditions
Affymetrix Probe IDa | Gene Symbol | Entrez GeneID | Gene Description | Growth Prop. of Varianceb | F testc | ρ0 Vivo/ρ0 Vitro | WT Vivo/WT Vivo | |||
|---|---|---|---|---|---|---|---|---|---|---|
FCd | P e | FCd | P e | |||||||
Up-regulated and dependent on growth conditions | 211571_s_at | CSPG2 | 1462 | chondroitin sulfate proteoglycan 2 | 0.99 | 1.41 × 10-12 | 34.6 | 0.0001 | 19.0 | 0.0002 |
215646_s_at | CSPG2 | 1462 | chondroitin sulfate proteoglycan 2 | 0.99 | 2.52 × 10-12 | 33.5 | 0.0003 | 20.3 | 0.0003 | |
220952_s_at | PLEKHA5 | 54477 | PI 3-phosphate-binding protein-2 | 0.99 | 1.79 × 10-11 | 6.7 | 0.0003 | 5.6 | 0.0006 | |
209090_s_at | SH3GLB1 | 51100 | SH3-domain GRB2-like endophilin B1 | 0.99 | 2.86 × 10-10 | 3.0 | 0.0015 | 3.1 | 0.0002 | |
216405_at | LGALS1 | 3956 | lectin, galactoside-binding, soluble, 1 | 0.98 | 6.43 × 10-12 | 11.5 | 0.0007 | 14.4 | 0.0006 | |
212254_s_at | DST | 667 | dystonin | 0.98 | 3.64 × 10-11 | 3.9 | 0.0006 | 4.7 | 0.0003 | |
201056_at | GOLGB1 | 2804 | golgin B1, golgi integral mem. protein | 0.98 | 2.12 × 10-10 | 3.3 | 0.0008 | 2.9 | 0.0004 | |
221829_s_at | TNPO1 | 3842 | transportin 1 | 0.98 | 2.86 × 10-10 | 4.0 | 0.0012 | 3.9 | 0.0005 | |
204619_s_at | CSPG2 | 1462 | chondroitin sulfate proteoglycan 2 | 0.98 | 3.01 × 10-11 | 12.2 | 0.0003 | 7.5 | 0.0003 | |
205173_x_at | CD58 | 965 | CD58 molecule | 0.98 | 1.70 × 10-10 | 3.5 | 0.0014 | 3.7 | 0.0004 | |
218901_at | PLSCR4 | 57088 | phospholipid scramblase 4 | 0.98 | 1.32 × 10-9 | 3.5 | 0.0009 | 3.8 | 0.0014 | |
213229_at | DICER1 | 23405 | Dicer1, Dcr-1 homolog | 0.97 | 2.18 × 10-10 | 6.1 | 0.0009 | 7.0 | 0.0013 | |
208772_at | ANKHD1 | 404734 | ankyrin repeat & KH domain containing 1 | 0.97 | 1.97 × 10-9 | 2.5 | 0.0027 | 2.4 | 0.0003 | |
221731_x_at | CSPG2 | 1462 | chondroitin sulfate proteoglycan 2 | 0.97 | 4.35 × 10-11 | 104.7 | 0.0001 | 30.9 | 0.0002 | |
201057_s_at | GOLGB1 | 2804 | golgin B1, golgi integral mem. protein | 0.97 | 1.39 × 10-9 | 3.2 | 0.0027 | 2.9 | 0.0002 | |
214295_at | KIAA0485 | 57235 | KIAA0485 protein | 0.97 | 4.14 × 10-10 | 3.9 | 0.0014 | 4.1 | 0.0008 | |
201024_x_at | EIF5B | 9669 | eukaryotic translation initiation factor 5B | 0.97 | 2.66 × 10-9 | 2.3 | 0.0012 | 2.2 | 0.0012 | |
201280_s_at | DAB2 | 1601 | disabled homolog 2 | 0.97 | 4.14 × 10-10 | 5.3 | 0.0004 | 3.5 | 0.0006 | |
218396_at | VPS13C | 54832 | vacuolar protein sorting 13 homolog C | 0.97 | 8.54 × 10-10 | 4.4 | 0.0012 | 4.8 | 0.0006 | |
205383_s_at | ZBTB20 | 26137 | zinc finger and BTB domain containing 20 | 0.97 | 5.52 × 10-10 | 4.2 | 0.0011 | 6.7 | 0.0003 | |
219221_at | ZBTB38 | 253461 | zinc finger and BTB domain containing 38 | 0.97 | 2.98 × 10-12 | 6.0 | 0.0007 | 6.5 | 0.0003 | |
208663_s_at | TTC3 | 7267 | tetratricopeptide repeat domain 3 | 0.97 | 1.19 × 10-9 | 3.1 | 0.0021 | 3.1 | 0.0013 | |
212070_at | GPR56 | 9289 | G protein-coupled receptor 56 | 0.97 | 3.78 × 10-10 | 3.3 | 0.0007 | 4.3 | 0.0008 | |
203216_s_at | MYO6 | 4646 | myosin VI | 0.97 | 2.35 × 10-9 | 3.1 | 0.0018 | 2.7 | 0.0012 | |
204620_s_at | CSPG2 | 1462 | chondroitin sulfate proteoglycan 2 | 0.97 | 6.97 × 10-11 | 104.5 | 0.0001 | 27.8 | 0.0002 | |
212062_at | ATP9A | 10079 | ATPase, Class II, type 9A | 0.97 | 2.73 × 10-9 | 2.5 | 0.0002 | 2.7 | 0.0030 | |
213775_x_at | ZNF638 | 27332 | zinc finger protein 638 | 0.97 | 2.86 × 10-10 | 2.6 | 0.0008 | 3.0 | 0.0005 | |
Down-regulated and dependent on growth conditions | 213201_s_at | TNNT1 | 7138 | troponin T type 1 | 0.99 | 6.43 × 10-12 | -6.9 | 0.0002 | -5.0 | 0.0003 |
212432_at | GRPEL1 | 80273 | GrpE-like 1, mitochondrial | 0.99 | 1.37 × 10-9 | -2.3 | 0.0008 | -2.3 | 0.0005 | |
209507_at | RPA3 | 6119 | replication protein A3, 14 kDa | 0.98 | 6.76 × 10-10 | -2.2 | 0.0010 | -2.3 | 0.0002 | |
209825_s_at | UCK2 | 7371 | uridine-cytidine kinase 2 | 0.98 | 1.09 × 10-9 | -2.5 | 0.0019 | -2.3 | 0.0006 | |
202533_s_at | DHFR | 1719 | dihydrofolate reductase | 0.98 | 3.51 × 10-9 | -2.1 | 0.0013 | -2.0 | 0.0006 | |
201577_at | NME1 | 4830 | non-metastatic cells 1, protein expressed | 0.97 | 2.29 × 10-9 | -2.1 | 0.0014 | -2.0 | 0.0004 | |
208756_at | EIF3S2 | 8668 | euk. transl. init. factor 3, subunit 2 beta | 0.97 | 1.92 × 10-8 | -1.8 | 0.0002 | -1.7 | 0.0013 | |
207239_s_at | PCTK1 | 5127 | PCTAIRE protein kinase 1 | 0.97 | 6.29 × 10-9 | -1.9 | 0.0017 | -1.9 | 0.0007 | |
204126_s_at | CDC45L | 8318 | CDC45 cell division cycle 45-like | 0.97 | 2.31 × 10-8 | -2.0 | 0.0030 | -1.9 | 0.0004 | |
219162_s_at | MRPL11* | 65003 | mitochondrial ribosomal protein L11 | 0.97 | 1.37 × 10-9 | -2.5 | 0.0010 | -2.2 | 0.0006 | |
208847_s_at | ADH5 | 128 | alcohol dehydrogenase 5, chi polypeptide | 0.97 | 5.92 × 10-8 | -1.7 | 0.0022 | -1.6 | 0.0007 | |
210250_x_at | ADSL | 158 | adenylosuccinate lyase | 0.97 | 4.04 × 10-9 | -2.0 | 0.0015 | -2.3 | 0.0012 | |
208799_at | PSMB5 | 5693 | proteasome beta 5 subunit | 0.97 | 2.6 × 10-8 | -1.9 | 0.0025 | -1.8 | 0.0004 | |
221620_s_at | NOMO3 | 408050 | NODAL modulator 3 | 0.97 | 1.64 × 10-9 | -2.0 | 0.0015 | -2.3 | 0.0004 | |
210519_s_at | NQO1 | 1728 | NAD(P)H dehydrogenase, quinone 1 | 0.97 | 7.60 × 10-9 | -2.1 | 0.0020 | -1.8 | 0.0007 | |
208910_s_at | C1QBP | 708 | splicing factor SF2-associated protein | 0.97 | 1.63 × 10-9 | -2.4 | 0.0020 | -2.5 | 0.0008 | |
201903_at | UQCRC1 | 7384 | ubiquinol-cytochrome c reductase | 0.97 | 9.25 × 10-9 | -1.8 | 0.0019 | -2.1 | 0.0009 | |
200039_s_at | PSMB2 | 5690 | proteasome subunit, beta type, 2 | 0.97 | 5.72 × 10-9 | -1.9 | 0.0022 | -2.0 | 0.0006 | |
217960_s_at | TOMM22 | 56993 | mitochondrial import receptor Tom22 | 0.97 | 1.04 × 10-8 | -2.2 | 0.0007 | -1.9 | 0.0014 | |
205691_at | SYNGR3 | 9143 | synaptogyrin 3 | 0.97 | 1.83 × 10-9 | -3.1 | 0.0012 | -2.4 | 0.0012 | |