Table 2 Sequences examined by qPCR
Putative function or identity | Cluster or singlet ID | Primers for qPCR (5' to 3') | |
|---|---|---|---|
| Â | Â | Forward | Reverse |
Glycine-rich cell wall protein | 1302 | ACAAGTACACGTTCCTCCAGCTT | CAGCTCCAGCTCCAGCATCAT |
Unknown | 4016 | CCAGGCAAATCAGACGGACTCT | TTTCAGCGCGCCAATGACACATTC |
Unknown | 2170 | GGTCGGTGGCATTGTCGATTT | AAGGCCAAGAACGCCGTGAA |
Unknown | 1101 | CAGGTCTCGCCGGTGTTAGA | ATGACTTTCTCGCGTTGGCATGAATG |
Trihydrophobin precursor | 2189 | GGCCTAGAAGCCACTACGCTAA | CTGCTGCCTCATCCCACTTCT |
Conserved hypothetical protein | 13 | ATGGACACTGGTGCCGGTTT | CCCTGAGCAGCATCCATGAAGT |
Blue light-induced gene 3 (bli-3) | 2277 | GAGAGCACTATTCTCCTGCTCTCAAG | TTGATGAGGCCAATTCTCGGATCCT |
Polyketide synthase (CTB1) | 834 | GTCGGTATCACCTGCAGATGGA | CCTGGCCACAAGACGAAAGTC |
Opsin (nop-1) | 839 | CCAGTCAATGTAGCGGGCAAAGTAG | TCTGTCCTACTTCGCCATGGCTA |
Cryptochrome/photolyase | CBYB4938 | AGTTCTGGGATTGCTGGACCGAAA | TCTCGCCACCTTTATGAGGCGAA |
Phytochrome | 217 | GGAGGTAGAAATCAGTATCGCAGACT | CCGGTGATGACGGGTTCTGT |
Cutinase | 2054 | TTCAGCTGGGAGAGCAGGATCTT | CGCAGAAGGCATGATTGAAGTACTTG |
Catalase | 908 | CTTCGGCGGCAAGTTCGACTA | CAGTCTTGCGAGTCCGTCATCAAG |
Regulator of xylanase activity (xlnR) | 740 | GCCTTGCAGCAGATAGATTCCGAAA | CTCCTCACAGTCCTTCATCTCTGCTA |
Regulator of cutinase activity (cf1α) | 661 | GCTGGCGAGACAGGTCTTGATC | GATGCCGCAGAGGCTCAAAAG |
Transposable element (Zephyr) | 17 | GACGCTCTCCGTAAAGGCAAGAAC | GGGATATATAGGCGGTTCCGGTAGA |
β-tubulin (TUB2) | n/a1 | GGCTGGTGAGTGGTGCGAAA | GCTCAACAGCGATCTGCGCA |
18S ribosomal | n/a | CAGGCCTTTGCTCGAATACATTAGCAT | GGATGCCCCCGACTATCCCTATTA |