A process for analysis of microarray comparative genomics hybridisation studies for bacterial genomes

BMC Genomics

Table 7 Analysis of microarray hybridisation data from 19 unsequenced test strains. The CGH microarray data was cleaned, normalised and cut-off assessed using the MKD method, then the Pearson's correlation co-efficient was calculated for comparison between each test and reference strain. The highest correlation is shown below. The strain ID, source and slide codes for each of the test strains is included

Strain	Source	Slide replicate numbers			Reference strain most correlated with
					Strain	Pearson Correlation Coefficient
0023/99	Bovine	13248842	12842688		EDL933	0.78
0059/99	Bovine	12842681	13252965		EDL933	0.83
0144/99	Ovine	12842593	13248844		EDL933	0.83
0445/99	Ovine	12842605	12842576		EDL933	0.85
0796/00	Bovine	12842610	12842591		EDL933	0.78
1299/00	Human	12842608	13248843		EDL933	0.83
1463/00	Human	12842620	12842580		EDL933	0.85
1464/00	Human	12842621	12842581		EDL933	0.79
1471/00	Human	13252961	13248846	12842615	EDL933	0.81
1472/00	Human	13252963	12842582	12842614	EDL933	0.86
1484/00	Bovine (Burger)	12842669	13248838		EDL933	0.66
1489/00	Bovine (Steak)	12842668	12842577		EDL933	0.75
1812/00	Bovine	12842666	12842578		EDL933	0.81
1585/00	Bovine	12842603	12842586		EDL933	0.88
0945/00	Bovine	12842682	12842583		EDL933	0.79
0330/01	Bovine	12842680	13248839		EDL933	0.84
0864/00	Bovine	13248841	12842613		EDL933	0.82
1070/00	Bovine	12842678	13248840		Sakai	0.59
1176/00	Bovine	12842601	12842585		MG1655	0.85

ISSN: 1471-2164