Table 5 Genes sorted by SVM weight, bipolar versus control
Expression data only | Demographic, clinical, and expression data | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
All subjects | All subjects | ||||||||||
SVM-weight | p-value | q-value | ID | GenBank | Symbol | SVM-weight | p-value | q-value | ID | GenBank | Symbol |
-1.04E-01 | 4.47E-03 | 9.53E-02 | 205033_s_at | NM_004084 | DEFA1/3 | 2.00E-01 | 2.92E-18 | 4.66E-14 | Drug use | Â | Â |
-1.03E-01 | 1.78E-03 | 6.98E-02 | 218055_s_at | NM_018268 | WDR41 | 1.68E-01 | 7.09E-13 | 5.66E-09 | Alcohol use | Â | Â |
-9.48E-02 | 1.34E-02 | 1.46E-01 | 203231_s_at | AW235612 | ATXN1 | -9.09E-02 | 3.22E-04 | 3.62E-02 | 202203_s_at | NM_001144 | AMFR |
-9.06E-02 | 1.70E-02 | 1.63E-01 | 219525_at | NM_018242 | SLC47A1 | -8.38E-02 | 4.47E-03 | 9.46E-02 | 205033_s_at | NM_004084 | DEFA1/3 |
8.92E-02 | 9.79E-03 | 1.27E-01 | 215147_at | AF007147 | CUGBP2 | -7.98E-02 | 1.34E-02 | 1.45E-01 | 203231_s_at | AW235612 | ATXN1 |
-8.86E-02 | 3.22E-04 | 3.72E-02 | 202203_s_at | NM_001144 | AMFR | 7.67E-02 | 6.28E-05 | 1.96E-02 | PMI | Â | Â |
7.65E-02 | 2.36E-02 | 1.90E-01 | 204285_s_at | AI857639 | PMAIP1 | 7.63E-02 | 9.79E-03 | 1.27E-01 | 215147_at | AF007147 | CUGBP2 |
-7.61E-02 | 1.44E-03 | 6.36E-02 | 203031_s_at | NM_000375 | UROS | 6.58E-02 | 2.36E-02 | 1.89E-01 | 204285_s_at | AI857639 | PMAIP1 |
-7.44E-02 | 6.61E-03 | 1.09E-01 | 218951_s_at | NM_018390 | PLCXD1 | -6.40E-02 | 1.78E-03 | 6.88E-02 | 218055_s_at | NM_018268 | WDR41 |
7.17E-02 | 6.47E-03 | 1.09E-01 | 215528_at | AL049390 | MGAT5 | -6.23E-02 | 1.70E-02 | 1.62E-01 | 219525_at | NM_018242 | SLC47A1 |
-6.98E-02 | 1.54E-03 | 6.46E-02 | 221579_s_at | AF062530 | NUDT3 | -5.94E-02 | 1.05E-02 | 1.32E-01 | 209189_at | BC004490 | FOS |
-6.67E-02 | 1.37E-09 | 2.19E-05 | 213921_at | NM_001048 | SST | 5.60E-02 | 6.47E-03 | 1.08E-01 | 215528_at | AL049390 | MGAT5 |
-6.62E-02 | 1.05E-02 | 1.33E-01 | 209189_at | BC004490 | FOS | -5.49E-02 | 6.61E-03 | 1.08E-01 | 218951_s_at | NM_018390 | PLCXD1 |
-6.48E-02 | 6.72E-06 | 9.04E-03 | 221011_s_at | NM_030915 | LBH | -5.46E-02 | 1.37E-09 | 7.31E-06 | 213921_at | NM_001048 | SST |
6.46E-02 | 4.79E-03 | 9.73E-02 | 217617_at | AW451711 | PBX1 | -5.44E-02 | 2.53E-03 | 7.69E-02 | 203528_at | NM_006378 | SEMA4D |
-5.98E-02 | 4.63E-03 | 9.59E-02 | 204507_s_at | NM_000945 | PPP3R1 | -5.40E-02 | 1.54E-03 | 6.37E-02 | 221579_s_at | AF062530 | NUDT3 |
-5.87E-02 | 1.26E-03 | 6.14E-02 | 204545_at | NM_000287 | PEX6 | -5.33E-02 | 2.49E-03 | 7.69E-02 | 200976_s_at | NM_006024 | TAX1BP1 |
5.80E-02 | 2.72E-02 | 2.02E-01 | 217482_at | AK021987 | HEMBB1000354 | 5.33E-02 | 4.79E-03 | 9.66E-02 | 217617_at | AW451711 | PBX1 |
-5.67E-02 | 2.53E-03 | 7.78E-02 | 203528_at | NM_006378 | SEMA4D | -5.23E-02 | 1.26E-03 | 6.05E-02 | 204545_at | NM_000287 | PEX6 |
5.45E-02 | 1.45E-02 | 1.52E-01 | 217055_x_at | S83374 | SLC1A2 | 5.17E-02 | 1.45E-02 | 1.52E-01 | 217055_x_at | S83374 | SLC1A2 |
Male subjects | Male subjects | ||||||||||
-8.15E-02 | 2.96E-05 | 1.08E-01 | 219525_at | NM_018242 | SLC47A1 | 1.61E-01 | 4.55E-10 | 3.34E-06 | Alcohol use | Â | Â |
-6.62E-02 | 2.50E-03 | 3.49E-01 | 208151_x_at | NM_030881 | DDX17 | 1.27E-01 | 1.68E-12 | 2.47E-08 | Drug use | Â | Â |
-6.36E-02 | 1.02E-02 | 3.49E-01 | 218055_s_at | NM_018268 | WDR41 | 7.30E-02 | 3.77E-03 | 3.48E-01 | PMI | Â | Â |
-6.35E-02 | 2.91E-03 | 3.49E-01 | 205048_s_at | NM_003832 | PSPH | -6.30E-02 | 2.96E-05 | 7.68E-02 | 219525_at | NM_018242 | SLC47A1 |
-6.12E-02 | 2.15E-03 | 3.49E-01 | 218948_at | AL136679 | QRSL1 | -5.73E-02 | 2.91E-03 | 3.48E-01 | 205048_s_at | NM_003832 | PSPH |
-5.44E-02 | 2.09E-03 | 3.49E-01 | 202203_s_at | NM_001144 | AMFR | -5.47E-02 | 3.85E-03 | 3.48E-01 | 205924_at | BC005035 | RAB3B |
5.33E-02 | 4.53E-03 | 3.49E-01 | 216006_at | AF070620 | WIPF2 | -5.16E-02 | 2.50E-03 | 3.48E-01 | 208151_x_at | NM_030881 | DDX17 |
-5.09E-02 | 3.85E-03 | 3.49E-01 | 205924_at | BC005035 | RAB3B | -5.14E-02 | 2.09E-03 | 3.48E-01 | 202203_s_at | NM_001144 | AMFR |
-4.90E-02 | 1.17E-02 | 3.49E-01 | 208719_s_at | U59321 | DDX17 | -5.12E-02 | 2.15E-03 | 3.48E-01 | 218948_at | AL136679 | QRSL1 |
4.79E-02 | 1.23E-02 | 3.49E-01 | 210738_s_at | AF011390 | SLC4A4 | -4.36E-02 | 1.02E-02 | 3.48E-01 | 218055_s_at | NM_018268 | WDR41 |
4.79E-02 | 4.39E-02 | 3.49E-01 | 202853_s_at | NM_002958 | RYK | 4.20E-02 | 4.53E-03 | 3.48E-01 | 216006_at | AF070620 | WIPF2 |
4.76E-02 | 2.39E-02 | 3.49E-01 | 207181_s_at | NM_001227 | CASP7 | -3.96E-02 | 2.06E-04 | 1.68E-01 | Brain pH | Â | Â |
-4.74E-02 | 2.04E-02 | 3.49E-01 | 204416_x_at | NM_001645 | APOC1 | -3.84E-02 | 1.17E-02 | 3.48E-01 | 208719_s_at | U59321 | DDX17 |
4.53E-02 | 1.52E-03 | 3.49E-01 | 204712_at | NM_007191 | WIF1 | 3.76E-02 | 2.06E-02 | 3.48E-01 | 214722_at | AW516297 | NOTCH2NL |
-4.51E-02 | 3.53E-03 | 3.49E-01 | 204545_at | NM_000287 | PEX6 | 3.75E-02 | 4.39E-02 | 3.48E-01 | 202853_s_at | NM_002958 | RYK |
-4.50E-02 | 6.16E-03 | 3.49E-01 | 205033_s_at | NM_004084 | DEFA1/3 | 3.74E-02 | 9.42E-03 | 3.48E-01 | 209291_at | AW157094 | ID4 |
4.31E-02 | 2.46E-02 | 3.49E-01 | 219255_x_at | NM_018725 | IL17RB | -3.67E-02 | 2.04E-02 | 3.48E-01 | 204416_x_at | NM_001645 | APOC1 |
-4.29E-02 | 8.23E-05 | 1.34E-01 | 213921_at | NM_001048 | SST | -3.60E-02 | 3.53E-03 | 3.48E-01 | 204545_at | NM_000287 | PEX6 |
4.26E-02 | 3.48E-02 | 3.49E-01 | 218500_at | NM_016647 | C8orf55 | 3.56E-02 | 1.23E-02 | 3.48E-01 | 210738_s_at | AF011390 | SLC4A4 |
-4.25E-02 | 5.38E-07 | 7.90E-03 | 202688_at | NM_003810 | TNFSF10 | -3.55E-02 | 6.16E-03 | 3.48E-01 | 205033_s_at | NM_004084 | DEFA1/3 |
Female subjects | Female subjects | ||||||||||
6.17E-02 | 3.51E-02 | 3.21E-01 | 211751_at | BC005949 | PDE4DIP | 9.50E-02 | 3.19E-08 | 3.84E-04 | Drug use | Â | Â |
-5.56E-02 | 3.95E-02 | 3.21E-01 | 202688_at | NM_003810 | TNFSF10 | 8.85E-02 | 3.09E-04 | 3.21E-01 | Left brain | Â | Â |
-4.20E-02 | 1.30E-02 | 3.21E-01 | 201222_s_at | AL527365 | RAD23B | 5.17E-02 | 3.51E-02 | 3.21E-01 | 211751_at | BC005949 | PDE4DIP |
-4.19E-02 | 1.89E-02 | 3.21E-01 | 211990_at | M27487 | HLA-DPA1 | 5.01E-02 | 6.64E-06 | 4.00E-02 | Age | Â | Â |
-4.04E-02 | 1.00E-02 | 3.21E-01 | 202581_at | NM_005346 | HSPA1B | -4.93E-02 | 3.95E-02 | 3.21E-01 | 202688_at | NM_003810 | TNFSF10 |
-3.77E-02 | 5.25E-02 | 3.21E-01 | 202203_s_at | NM_001144 | AMFR | 4.09E-02 | 2.66E-03 | 3.21E-01 | Alcohol use | Â | Â |
-3.74E-02 | 4.26E-02 | 3.21E-01 | 217757_at | NM_000014 | A2M | -3.88E-02 | 1.30E-02 | 3.21E-01 | 201222_s_at | AL527365 | RAD23B |
3.72E-02 | 5.74E-02 | 3.21E-01 | 213757_at | AA393940 | EIF5A | -3.71E-02 | 1.00E-02 | 3.21E-01 | 202581_at | NM_005346 | HSPA1B |
-3.70E-02 | 2.24E-03 | 3.21E-01 | 221579_s_at | AF062530 | NUDT3 | -3.50E-02 | 5.25E-02 | 3.21E-01 | 202203_s_at | NM_001144 | AMFR |
-3.62E-02 | 1.15E-03 | 3.21E-01 | 203416_at | NM_000560 | CD53 | 3.46E-02 | 5.74E-02 | 3.21E-01 | 213757_at | AA393940 | EIF5A |
-3.49E-02 | 2.55E-03 | 3.21E-01 | 208691_at | BC001188 | TFRC | -3.29E-02 | 4.26E-02 | 3.21E-01 | 217757_at | NM_000014 | A2M |
3.36E-02 | 2.92E-03 | 3.21E-01 | 205990_s_at | NM_003392 | WNT5A | -3.26E-02 | 1.15E-03 | 3.21E-01 | 203416_at | NM_000560 | CD53 |
-3.33E-02 | 2.68E-02 | 3.21E-01 | 202291_s_at | NM_000900 | MGP | -3.25E-02 | 1.89E-02 | 3.21E-01 | 211990_at | M27487 | HLA-DPA1 |
-3.32E-02 | 2.63E-03 | 3.21E-01 | 200800_s_at | NM_005345 | HSPA1A/B | -2.99E-02 | 2.68E-02 | 3.21E-01 | 202291_s_at | NM_000900 | MGP |
-3.30E-02 | 2.60E-02 | 3.21E-01 | 211038_s_at | BC006312 | CROCCL1 | -2.95E-02 | 2.24E-03 | 3.21E-01 | 221579_s_at | AF062530 | NUDT3 |
-3.27E-02 | 4.16E-02 | 3.21E-01 | 218589_at | NM_005767 | P2RY5 | -2.91E-02 | 2.63E-03 | 3.21E-01 | 200800_s_at | NM_005345 | HSPA1A/B |
-3.23E-02 | 6.22E-02 | 3.21E-01 | 203231_s_at | AW235612 | ATXN1 | 2.89E-02 | 2.92E-03 | 3.21E-01 | 205990_s_at | NM_003392 | WNT5A |
-3.21E-02 | 5.41E-02 | 3.21E-01 | 218055_s_at | NM_018268 | WDR41 | -2.89E-02 | 1.45E-02 | 3.21E-01 | 202746_at | AL021786 | ITM2A |
-3.17E-02 | 3.12E-02 | 3.21E-01 | 210004_at | AF035776 | OLR1 | -2.79E-02 | 5.14E-02 | 3.21E-01 | 209458_x_at | AF105974 | HBA1/2 |
-3.11E-02 | 1.70E-02 | 3.21E-01 | 206577_at | NM_003381 | VIP | -2.75E-02 | 6.56E-02 | 3.21E-01 | 201718_s_at | BF511685 | EPB41L2 |