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Table 5 Genes sorted by SVM weight, bipolar versus control

From: Combining gene expression, demographic and clinical data in modeling disease: a case study of bipolar disorder and schizophrenia

Expression data only Demographic, clinical, and expression data
All subjects All subjects
SVM-weight p-value q-value ID GenBank Symbol SVM-weight p-value q-value ID GenBank Symbol
-1.04E-01 4.47E-03 9.53E-02 205033_s_at NM_004084 DEFA1/3 2.00E-01 2.92E-18 4.66E-14 Drug use   
-1.03E-01 1.78E-03 6.98E-02 218055_s_at NM_018268 WDR41 1.68E-01 7.09E-13 5.66E-09 Alcohol use   
-9.48E-02 1.34E-02 1.46E-01 203231_s_at AW235612 ATXN1 -9.09E-02 3.22E-04 3.62E-02 202203_s_at NM_001144 AMFR
-9.06E-02 1.70E-02 1.63E-01 219525_at NM_018242 SLC47A1 -8.38E-02 4.47E-03 9.46E-02 205033_s_at NM_004084 DEFA1/3
8.92E-02 9.79E-03 1.27E-01 215147_at AF007147 CUGBP2 -7.98E-02 1.34E-02 1.45E-01 203231_s_at AW235612 ATXN1
-8.86E-02 3.22E-04 3.72E-02 202203_s_at NM_001144 AMFR 7.67E-02 6.28E-05 1.96E-02 PMI   
7.65E-02 2.36E-02 1.90E-01 204285_s_at AI857639 PMAIP1 7.63E-02 9.79E-03 1.27E-01 215147_at AF007147 CUGBP2
-7.61E-02 1.44E-03 6.36E-02 203031_s_at NM_000375 UROS 6.58E-02 2.36E-02 1.89E-01 204285_s_at AI857639 PMAIP1
-7.44E-02 6.61E-03 1.09E-01 218951_s_at NM_018390 PLCXD1 -6.40E-02 1.78E-03 6.88E-02 218055_s_at NM_018268 WDR41
7.17E-02 6.47E-03 1.09E-01 215528_at AL049390 MGAT5 -6.23E-02 1.70E-02 1.62E-01 219525_at NM_018242 SLC47A1
-6.98E-02 1.54E-03 6.46E-02 221579_s_at AF062530 NUDT3 -5.94E-02 1.05E-02 1.32E-01 209189_at BC004490 FOS
-6.67E-02 1.37E-09 2.19E-05 213921_at NM_001048 SST 5.60E-02 6.47E-03 1.08E-01 215528_at AL049390 MGAT5
-6.62E-02 1.05E-02 1.33E-01 209189_at BC004490 FOS -5.49E-02 6.61E-03 1.08E-01 218951_s_at NM_018390 PLCXD1
-6.48E-02 6.72E-06 9.04E-03 221011_s_at NM_030915 LBH -5.46E-02 1.37E-09 7.31E-06 213921_at NM_001048 SST
6.46E-02 4.79E-03 9.73E-02 217617_at AW451711 PBX1 -5.44E-02 2.53E-03 7.69E-02 203528_at NM_006378 SEMA4D
-5.98E-02 4.63E-03 9.59E-02 204507_s_at NM_000945 PPP3R1 -5.40E-02 1.54E-03 6.37E-02 221579_s_at AF062530 NUDT3
-5.87E-02 1.26E-03 6.14E-02 204545_at NM_000287 PEX6 -5.33E-02 2.49E-03 7.69E-02 200976_s_at NM_006024 TAX1BP1
5.80E-02 2.72E-02 2.02E-01 217482_at AK021987 HEMBB1000354 5.33E-02 4.79E-03 9.66E-02 217617_at AW451711 PBX1
-5.67E-02 2.53E-03 7.78E-02 203528_at NM_006378 SEMA4D -5.23E-02 1.26E-03 6.05E-02 204545_at NM_000287 PEX6
5.45E-02 1.45E-02 1.52E-01 217055_x_at S83374 SLC1A2 5.17E-02 1.45E-02 1.52E-01 217055_x_at S83374 SLC1A2
Male subjects Male subjects
-8.15E-02 2.96E-05 1.08E-01 219525_at NM_018242 SLC47A1 1.61E-01 4.55E-10 3.34E-06 Alcohol use   
-6.62E-02 2.50E-03 3.49E-01 208151_x_at NM_030881 DDX17 1.27E-01 1.68E-12 2.47E-08 Drug use   
-6.36E-02 1.02E-02 3.49E-01 218055_s_at NM_018268 WDR41 7.30E-02 3.77E-03 3.48E-01 PMI   
-6.35E-02 2.91E-03 3.49E-01 205048_s_at NM_003832 PSPH -6.30E-02 2.96E-05 7.68E-02 219525_at NM_018242 SLC47A1
-6.12E-02 2.15E-03 3.49E-01 218948_at AL136679 QRSL1 -5.73E-02 2.91E-03 3.48E-01 205048_s_at NM_003832 PSPH
-5.44E-02 2.09E-03 3.49E-01 202203_s_at NM_001144 AMFR -5.47E-02 3.85E-03 3.48E-01 205924_at BC005035 RAB3B
5.33E-02 4.53E-03 3.49E-01 216006_at AF070620 WIPF2 -5.16E-02 2.50E-03 3.48E-01 208151_x_at NM_030881 DDX17
-5.09E-02 3.85E-03 3.49E-01 205924_at BC005035 RAB3B -5.14E-02 2.09E-03 3.48E-01 202203_s_at NM_001144 AMFR
-4.90E-02 1.17E-02 3.49E-01 208719_s_at U59321 DDX17 -5.12E-02 2.15E-03 3.48E-01 218948_at AL136679 QRSL1
4.79E-02 1.23E-02 3.49E-01 210738_s_at AF011390 SLC4A4 -4.36E-02 1.02E-02 3.48E-01 218055_s_at NM_018268 WDR41
4.79E-02 4.39E-02 3.49E-01 202853_s_at NM_002958 RYK 4.20E-02 4.53E-03 3.48E-01 216006_at AF070620 WIPF2
4.76E-02 2.39E-02 3.49E-01 207181_s_at NM_001227 CASP7 -3.96E-02 2.06E-04 1.68E-01 Brain pH   
-4.74E-02 2.04E-02 3.49E-01 204416_x_at NM_001645 APOC1 -3.84E-02 1.17E-02 3.48E-01 208719_s_at U59321 DDX17
4.53E-02 1.52E-03 3.49E-01 204712_at NM_007191 WIF1 3.76E-02 2.06E-02 3.48E-01 214722_at AW516297 NOTCH2NL
-4.51E-02 3.53E-03 3.49E-01 204545_at NM_000287 PEX6 3.75E-02 4.39E-02 3.48E-01 202853_s_at NM_002958 RYK
-4.50E-02 6.16E-03 3.49E-01 205033_s_at NM_004084 DEFA1/3 3.74E-02 9.42E-03 3.48E-01 209291_at AW157094 ID4
4.31E-02 2.46E-02 3.49E-01 219255_x_at NM_018725 IL17RB -3.67E-02 2.04E-02 3.48E-01 204416_x_at NM_001645 APOC1
-4.29E-02 8.23E-05 1.34E-01 213921_at NM_001048 SST -3.60E-02 3.53E-03 3.48E-01 204545_at NM_000287 PEX6
4.26E-02 3.48E-02 3.49E-01 218500_at NM_016647 C8orf55 3.56E-02 1.23E-02 3.48E-01 210738_s_at AF011390 SLC4A4
-4.25E-02 5.38E-07 7.90E-03 202688_at NM_003810 TNFSF10 -3.55E-02 6.16E-03 3.48E-01 205033_s_at NM_004084 DEFA1/3
Female subjects Female subjects
6.17E-02 3.51E-02 3.21E-01 211751_at BC005949 PDE4DIP 9.50E-02 3.19E-08 3.84E-04 Drug use   
-5.56E-02 3.95E-02 3.21E-01 202688_at NM_003810 TNFSF10 8.85E-02 3.09E-04 3.21E-01 Left brain   
-4.20E-02 1.30E-02 3.21E-01 201222_s_at AL527365 RAD23B 5.17E-02 3.51E-02 3.21E-01 211751_at BC005949 PDE4DIP
-4.19E-02 1.89E-02 3.21E-01 211990_at M27487 HLA-DPA1 5.01E-02 6.64E-06 4.00E-02 Age   
-4.04E-02 1.00E-02 3.21E-01 202581_at NM_005346 HSPA1B -4.93E-02 3.95E-02 3.21E-01 202688_at NM_003810 TNFSF10
-3.77E-02 5.25E-02 3.21E-01 202203_s_at NM_001144 AMFR 4.09E-02 2.66E-03 3.21E-01 Alcohol use   
-3.74E-02 4.26E-02 3.21E-01 217757_at NM_000014 A2M -3.88E-02 1.30E-02 3.21E-01 201222_s_at AL527365 RAD23B
3.72E-02 5.74E-02 3.21E-01 213757_at AA393940 EIF5A -3.71E-02 1.00E-02 3.21E-01 202581_at NM_005346 HSPA1B
-3.70E-02 2.24E-03 3.21E-01 221579_s_at AF062530 NUDT3 -3.50E-02 5.25E-02 3.21E-01 202203_s_at NM_001144 AMFR
-3.62E-02 1.15E-03 3.21E-01 203416_at NM_000560 CD53 3.46E-02 5.74E-02 3.21E-01 213757_at AA393940 EIF5A
-3.49E-02 2.55E-03 3.21E-01 208691_at BC001188 TFRC -3.29E-02 4.26E-02 3.21E-01 217757_at NM_000014 A2M
3.36E-02 2.92E-03 3.21E-01 205990_s_at NM_003392 WNT5A -3.26E-02 1.15E-03 3.21E-01 203416_at NM_000560 CD53
-3.33E-02 2.68E-02 3.21E-01 202291_s_at NM_000900 MGP -3.25E-02 1.89E-02 3.21E-01 211990_at M27487 HLA-DPA1
-3.32E-02 2.63E-03 3.21E-01 200800_s_at NM_005345 HSPA1A/B -2.99E-02 2.68E-02 3.21E-01 202291_s_at NM_000900 MGP
-3.30E-02 2.60E-02 3.21E-01 211038_s_at BC006312 CROCCL1 -2.95E-02 2.24E-03 3.21E-01 221579_s_at AF062530 NUDT3
-3.27E-02 4.16E-02 3.21E-01 218589_at NM_005767 P2RY5 -2.91E-02 2.63E-03 3.21E-01 200800_s_at NM_005345 HSPA1A/B
-3.23E-02 6.22E-02 3.21E-01 203231_s_at AW235612 ATXN1 2.89E-02 2.92E-03 3.21E-01 205990_s_at NM_003392 WNT5A
-3.21E-02 5.41E-02 3.21E-01 218055_s_at NM_018268 WDR41 -2.89E-02 1.45E-02 3.21E-01 202746_at AL021786 ITM2A
-3.17E-02 3.12E-02 3.21E-01 210004_at AF035776 OLR1 -2.79E-02 5.14E-02 3.21E-01 209458_x_at AF105974 HBA1/2
-3.11E-02 1.70E-02 3.21E-01 206577_at NM_003381 VIP -2.75E-02 6.56E-02 3.21E-01 201718_s_at BF511685 EPB41L2