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Table 1 Markers chosen for mapping analysis

From: Application of dissociation curve analysis to radiation hybrid panel marker scoring: generation of a map of river buffalo (B. bubalis) chromosome 20

Marker ID

Marker Type

Primer Sequence

Primer Reference

AGLA233

microsatellite

F: 5'-tgcaaacatccacgtagcataaata

R: 5'-gcatgaacagccaatagtgtcatc

[40]

AKT-1

STS/gene

F: 5'-cacctgaccaagacgacagcat

R: 5'-cgaggttccactcaaacgcatc

UniSTS: 277959; Accession# X61036

AKT-2

microsatellite

F: 5'-tgcccattcccagagccctgt

R: 5'-cagctcgccccagggtgg

[41]

BM3413

microsatellite

F: 5'-tccctggtaaccaatgaattc

R: 5'-caatggatttgaccctccc

[42]

BMC5221

microsatellite

F: 5'-agcaaggagaacaggcattc

R: 5'-cttctttggcagcacagtttc

[42]

BMS1494

microsatellite

F: 5'-tctggagctgcaaaagacc

R: 5'-aatggatgactcctggatgg

[43]

BMS1561

microsatellite

F: 5'-acccacatgttgggagg

R: 5'-agggaaaggccaaagcac

Stone, 1996 (unpublished) Accession# G18764

BMS2382

microsatellite

F: 5'-agcacggagtcgttgtctg

R: 5'-ccatctggacagaacgttacc

[44]

BMS868

microsatellite

F: 5'-tcatccaaccatctcatcct

R: 5'-acatggaaacgaacctacattc

[43]

CC530547

STS/gene

F: 5'-tgatggattacctgatgcttcttgc

R: 5'-tcaaccacagtcttgcttgctttc

UniSTS: 476716

CHGA

STS/gene

F: 5'-cccttgcctttcaacgattatct

R: 5'-tcaggagtcctcagctttcacc

F: new design from Accession# NC_007319.2 (5199500352008294)

R: UniSTS: 278198

DIK2116

microsatellite

F: 5'-cagccacaactggaactcg

R: 5'-gggtcggttgcatcacat

[40]

DIK2367

microsatellite

F: 5'-tgctctatgaatcccaagctg

R: 5'-cctcgttttatggctgtgct

[40]

DIK2586

microsatellite

F: 5'-ggacgctgacttggaaggta

R: 5'-caccaacccttgtttccagt

[40]

DIK2821

microsatellite

F: 5'-cctttctgtcgtctcccttg

R: 5'-tccttggagggttttgtcc

[40]

DIK2849

microsatellite

F: 5'-cacagacgagatcagctcca

R: 5'-ccgataattgtccccaacag

[40]

DIK3001

microsatellite

F: 5'-ctcggggccaaaaaccaaaaccta

R: 5'-tccgagataaagtacagaaagtcc

[40]

DIK3009

microsatellite

F: 5'-tggggcccggaggagtggtg

R: 5'-gatgttcgagggctttct

[40]

DIK3023

microsatellite

F: 5'-tcttgccacctttggcttt

R: 5'-gaggcgtgatgacgtgtcca

[40]

DIK4322

microsatellite

F: 5'-tccatagtgccagtgagctg

R: 5'-ggagcgtccaaagataacca

[40]

DIK4894

microsatellite

F: 5'-ccagctttcttcctttacagtg

R: 5'-caatccttggactgggaaga

[40]

GRP58

STS/gene

F: 5'-gaaactccattttgctgtag

R: 5'-aacccacgctaacttgtaac

new design from Accession# NC_007319.2 (4901848149040683)

IDVGA-39

microsatellite

F: 5'-acggtgggaacatcttgtcacta

R: 5'-ccagtattcttcctgcgaaaaatc

[45]

IGF1R

STS/gene

F: 5'-ggaacatggtggacgtggac

R: 5'-gatgcgttggtgcgaatgta

new design from Accession# NC_007319.2 (93003629360647)

ILSTS054

microsatellite

F: 5'-gaggatcttgattttgatgtcc

R: 5'-agggccactatggtacttcc

[46]

ILSTS092

microsatellite

F: 5'-gagaaactttgggctgctgc

R: 5'-atggattgcttctgtggacc

[46]

MBIP

STS/gene

F: 5'-actattcactggctgaacttg

R: 5'-atggaaggtgacgtgttg

UniSTS: 278723

MFGE8

STS/gene

F: 5'-ggcacaaccgtatcacc

R: 5'-tccatcccagacctactcag

new design from Accession# NC_007319.2 (2021101820195989)

MULGE4

microsatellite

F: 5'-gcaacccttctgatgtcatgaacc

R: 5'-aaaagcacaactcccctcaaatcc

[47]

RM151

microsatellite

F: 5'-cccagaggtgacaacatttccag

R: 5'-gatccaccaaaaaccagctgga

[48]

SERPINA1

STS/gene

F: 5'-aagaacctgtatcactccgaagc

R: 5'-tgtgtttgggtcaagaacctttac

new design from Accession# NC_007319.2 (5259062252599991)