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Table 1 Markers chosen for mapping analysis

From: Application of dissociation curve analysis to radiation hybrid panel marker scoring: generation of a map of river buffalo (B. bubalis) chromosome 20

Marker ID Marker Type Primer Sequence Primer Reference
AGLA233 microsatellite F: 5'-tgcaaacatccacgtagcataaata
R: 5'-gcatgaacagccaatagtgtcatc
[40]
AKT-1 STS/gene F: 5'-cacctgaccaagacgacagcat
R: 5'-cgaggttccactcaaacgcatc
UniSTS: 277959; Accession# X61036
AKT-2 microsatellite F: 5'-tgcccattcccagagccctgt
R: 5'-cagctcgccccagggtgg
[41]
BM3413 microsatellite F: 5'-tccctggtaaccaatgaattc
R: 5'-caatggatttgaccctccc
[42]
BMC5221 microsatellite F: 5'-agcaaggagaacaggcattc
R: 5'-cttctttggcagcacagtttc
[42]
BMS1494 microsatellite F: 5'-tctggagctgcaaaagacc
R: 5'-aatggatgactcctggatgg
[43]
BMS1561 microsatellite F: 5'-acccacatgttgggagg
R: 5'-agggaaaggccaaagcac
Stone, 1996 (unpublished) Accession# G18764
BMS2382 microsatellite F: 5'-agcacggagtcgttgtctg
R: 5'-ccatctggacagaacgttacc
[44]
BMS868 microsatellite F: 5'-tcatccaaccatctcatcct
R: 5'-acatggaaacgaacctacattc
[43]
CC530547 STS/gene F: 5'-tgatggattacctgatgcttcttgc
R: 5'-tcaaccacagtcttgcttgctttc
UniSTS: 476716
CHGA STS/gene F: 5'-cccttgcctttcaacgattatct
R: 5'-tcaggagtcctcagctttcacc
F: new design from Accession# NC_007319.2 (5199500352008294)
R: UniSTS: 278198
DIK2116 microsatellite F: 5'-cagccacaactggaactcg
R: 5'-gggtcggttgcatcacat
[40]
DIK2367 microsatellite F: 5'-tgctctatgaatcccaagctg
R: 5'-cctcgttttatggctgtgct
[40]
DIK2586 microsatellite F: 5'-ggacgctgacttggaaggta
R: 5'-caccaacccttgtttccagt
[40]
DIK2821 microsatellite F: 5'-cctttctgtcgtctcccttg
R: 5'-tccttggagggttttgtcc
[40]
DIK2849 microsatellite F: 5'-cacagacgagatcagctcca
R: 5'-ccgataattgtccccaacag
[40]
DIK3001 microsatellite F: 5'-ctcggggccaaaaaccaaaaccta
R: 5'-tccgagataaagtacagaaagtcc
[40]
DIK3009 microsatellite F: 5'-tggggcccggaggagtggtg
R: 5'-gatgttcgagggctttct
[40]
DIK3023 microsatellite F: 5'-tcttgccacctttggcttt
R: 5'-gaggcgtgatgacgtgtcca
[40]
DIK4322 microsatellite F: 5'-tccatagtgccagtgagctg
R: 5'-ggagcgtccaaagataacca
[40]
DIK4894 microsatellite F: 5'-ccagctttcttcctttacagtg
R: 5'-caatccttggactgggaaga
[40]
GRP58 STS/gene F: 5'-gaaactccattttgctgtag
R: 5'-aacccacgctaacttgtaac
new design from Accession# NC_007319.2 (4901848149040683)
IDVGA-39 microsatellite F: 5'-acggtgggaacatcttgtcacta
R: 5'-ccagtattcttcctgcgaaaaatc
[45]
IGF1R STS/gene F: 5'-ggaacatggtggacgtggac
R: 5'-gatgcgttggtgcgaatgta
new design from Accession# NC_007319.2 (93003629360647)
ILSTS054 microsatellite F: 5'-gaggatcttgattttgatgtcc
R: 5'-agggccactatggtacttcc
[46]
ILSTS092 microsatellite F: 5'-gagaaactttgggctgctgc
R: 5'-atggattgcttctgtggacc
[46]
MBIP STS/gene F: 5'-actattcactggctgaacttg
R: 5'-atggaaggtgacgtgttg
UniSTS: 278723
MFGE8 STS/gene F: 5'-ggcacaaccgtatcacc
R: 5'-tccatcccagacctactcag
new design from Accession# NC_007319.2 (2021101820195989)
MULGE4 microsatellite F: 5'-gcaacccttctgatgtcatgaacc
R: 5'-aaaagcacaactcccctcaaatcc
[47]
RM151 microsatellite F: 5'-cccagaggtgacaacatttccag
R: 5'-gatccaccaaaaaccagctgga
[48]
SERPINA1 STS/gene F: 5'-aagaacctgtatcactccgaagc
R: 5'-tgtgtttgggtcaagaacctttac
new design from Accession# NC_007319.2 (5259062252599991)