Table 1 Salmonid cDNA libraries, sequencing and assembly summary statistics for data provided in this study.
From: A salmonid EST genomic study: genes, duplications, phylogeny and microarrays
Species/Tissue/(library) | # clonesa | Insert sizeb | # seqc | # contigsd | #. of singletse | Max. contigf | Ave. contigg | % new (sp.)h |
|---|---|---|---|---|---|---|---|---|
Salmo salar | Â | Â | Â | Â | Â | Â | Â | Â |
   Thymus (evd) | 31488 | 1.5 | 59264 | 23768 | 8685 | 66 | 2.3 | 16 |
   Thyroid (eve) | 30720 | 1.9 | 58700 | 28045 | 12378 | 37 | 2.1 | 15 |
   Head kidney (evf) | 31104 | 1.5 | 59541 | 28316 | 10832 | 30 | 2.1 | 16 |
   Pyloric Caecum (pla, plb, plc, plna, plnb, pha, phc) | 9584 | 0.9 | 13543 | 5691 | 2766 | 35 | 2.3 | 17 |
   Brain, kidney, spleen (rgb2) | 60288 | 1.6 | 97171 | 42562 | 26504 | 58 | 2.1 | 15 |
   Brain, kidney, spleen (sjb) | 5835 | 1.8 | 10085 | 6656 | 3541 | 8 | 1.5 | 18 |
Oncorhynchus tschawytscha | Â | Â | Â | Â | Â | Â | Â | Â |
   Brain, kidney, spleen (rgd) | 3840 | 2.1 | 5935 | 3941 | 2970 | 31 | 1.5 | 82 |
   Brain, kidney, spleen (evc) | 3744 | 1.8 | 5729 | 3841 | 2487 | 10 | 1.5 | 80 |
Oncorhynchus nerka | Â | Â | Â | Â | Â | Â | Â | Â |
   Brain, kidney, spleen (rge) | 7296 | 2.0 | 10813 | 6123 | 3924 | 173 | 1.8 | 98 |
Salvelinus fontinalis | Â | Â | Â | Â | Â | Â | Â | Â |
   Brain, kidney, spleen (evi) | 5376 | 1.4 | 10051 | 5424 | 1247 | 9 | 1.9 | 100 |
Coregonus clupeaformis | Â | Â | Â | Â | Â | Â | Â | Â |
   Eye, kidney, spleen (evb) | 4800 | 1.6 | 8630 | 5537 | 3359 | 12 | 1.6 | 93 |
Thymallus thymallus | Â | Â | Â | Â | Â | Â | Â | Â |
   Brain, kidney, spleen (evl) | 5760 | 1.5 | 10975 | 5926 | 1309 | 6 | 1.9 | 100 |
Esox lucius | Â | Â | Â | Â | Â | Â | Â | Â |
   Brain, kidney, spleen (bkhp) | 2304 | 0.9 | 3624 | 2420 | 1346 | 6 | 1.5 | 100 |