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Table 1 Salmonid cDNA libraries, sequencing and assembly summary statistics for data provided in this study.

From: A salmonid EST genomic study: genes, duplications, phylogeny and microarrays

Species/Tissue/(library) # clonesa Insert sizeb # seqc # contigsd #. of singletse Max. contigf Ave. contigg % new (sp.)h
Salmo salar         
   Thymus (evd) 31488 1.5 59264 23768 8685 66 2.3 16
   Thyroid (eve) 30720 1.9 58700 28045 12378 37 2.1 15
   Head kidney (evf) 31104 1.5 59541 28316 10832 30 2.1 16
   Pyloric Caecum (pla, plb, plc, plna, plnb, pha, phc) 9584 0.9 13543 5691 2766 35 2.3 17
   Brain, kidney, spleen (rgb2) 60288 1.6 97171 42562 26504 58 2.1 15
   Brain, kidney, spleen (sjb) 5835 1.8 10085 6656 3541 8 1.5 18
Oncorhynchus tschawytscha         
   Brain, kidney, spleen (rgd) 3840 2.1 5935 3941 2970 31 1.5 82
   Brain, kidney, spleen (evc) 3744 1.8 5729 3841 2487 10 1.5 80
Oncorhynchus nerka         
   Brain, kidney, spleen (rge) 7296 2.0 10813 6123 3924 173 1.8 98
Salvelinus fontinalis         
   Brain, kidney, spleen (evi) 5376 1.4 10051 5424 1247 9 1.9 100
Coregonus clupeaformis         
   Eye, kidney, spleen (evb) 4800 1.6 8630 5537 3359 12 1.6 93
Thymallus thymallus         
   Brain, kidney, spleen (evl) 5760 1.5 10975 5926 1309 6 1.9 100
Esox lucius         
   Brain, kidney, spleen (bkhp) 2304 0.9 3624 2420 1346 6 1.5 100
  1. a number of clones from which at least one sequence (5' or 3') was obtained
  2. b average EST fragment size cloned (kb), estimated from > 30 clone digests.
  3. c number of 5' and 3' EST sequences obtained
  4. d number of EST contigs (1st stage assembly) that includes singlets
  5. e number of contigs containing a single sequence
  6. f the size of the contig containing the largest number of sequences
  7. g the average size of all contigs (includes singletons)
  8. h percent of the putative transcripts that are unique to the species.