Table 4 Gene sets used in phylogenetic analysis.*

Om/Sf

-

no

Q9EPH8

0.0E+00

Polyadenylate-binding protein 1

-

-

yes

Q92572

1.0E-103

AP-3 complex subunit sigma-1

Om/Sf

-

yes

P41134

4.0E-31

DNA-binding protein inhibitor ID-1

-

-

yes

Q24117

2.0E-46

Dynein light chain 1, cytoplasmic

Om/Sf

C/T

yes

P38400

0.0E+00

Guanine nucleotide-binding protein G(i)

-

-

-

P09486

1.0E-138

SPARC precursor

-

-

no

Unknown

Om/Sf

-

yes

P62161

4.0E-80

Calmodulin

Ss/Sf

-

no

Q9Y5S9

4.0E-80

RNA-binding protein 8A

Om/Sf

-

no

P51410

4.0E-95

60S ribosomal protein L9

Om/Sf

-

yes

Q3MHN0

3.0E-95

Proteasome subunit beta type-6 precursor

-

-

-

O60493

1.0E-82

Sorting nexin-3

Ss/Sf

-

yes

O15247

8.0E-97

Chloride intracellular channel protein 2

Om/Sf

-

no

Q9NPI5

6.0E-73

Nicotinamide riboside kinase 2

Om/Sf

S/C

no

P13668

2.0E-47

Stathmin

Ss/Sf

-

no

Q6IQU6

1.0E-154

Ribosome production factor 1

-

-

yes

Q9D915

6.0E-23

Uncharacterized protein C8orf4 homolog

-

-

-

Q8VHZ7

1.0E-125

U3 small nucleolar ribonucleoprotein

-

-

yes

Q05826

1.0E-35

CCAAT/enhancer-binding protein beta

-

-

yes

P97371

1.0E-68

Proteasome activator complex subunit 1

-

C/T

yes

Q96GG9

1.0E-135

DCN1-like protein 1

-

-

yes

Q3T0B6

1.0E-91

Complement 1 Q subcomponent-binding

-

S/C

-

P05141

1.0E-149

ADP/ATP translocase 2

-

-

no

Q9UM00

2.0E-78

Transmembrane and coiled-coil domain

Om/Sf

-

yes

Q6PC69

1.0E-101

60S ribosomal protein L10a

-

-

no

Q5RE33

2.0E-67

Receptor expression-enhancing protein 5

Om/Sf

-

yes

P50397

0.0E+00

Rab GDP dissociation inhibitor beta

Ss/Sf

S/C

yes

P30044

8.0E-64

Peroxiredoxin-5, mitochondrial prec.

-

S/C

no

P15156

1.0E-115

Calcium-dependent serine proteinase

-

S/C

yes

Unknown

-

-

yes

Q9CXL1

8.0E-78

Transmembrane protein 50A

-

-

yes

Q62636

2.0E-90

Ras-related protein Rap-1b precursor

Om/Sf

-

yes

Q3T0Q6

3.0E-71

Cellular nucleic acid-binding protein

-

-

yes

O54734

0.0E+00

Dolichyl-diphosphooligosaccharide

Om/Sf

S/C

no

Q9W719

1.0E-117

Hypoxanthine-guanine phosphoribosyltran.

Om/Sf

-

no

O42123

2.0E-48

FK506-binding protein 1A

-

-

yes

Q9Y5K5

1.0E-161

Ubiquitin carboxyl-terminal hydrolase

Ss/Sf

C/T

yes

P50897

1.0E-120

Palmitoyl-protein thioesterase 1 prec.

-

S/C

no

Q75AA8

7.0E-44

Translation machinery-associated protein

Ss/Sf

-

yes

Q9UL46

4.0E-76

Proteasome activator complex subunit 2

-

-

no

Q96A49

1.0E-100

Synapse-associated protein 1

-

S/C

yes

Q9JK11

8.0E-66

Reticulon-4

-

S/T

no

P67810

5.0E-97

Signal peptidase complex catalytic sub.

-

S/C

yes

Q5XIH7

1.0E-112

Prohibitin-2

Om/Sf

-

yes

P28497

1.0E-136

F-actin-capping protein subunit alpha-2

-

-

no

Q8BLR9

7.0E-16

Hypoxia-inducible factor 1 alpha inhibitor

Om/Sf

-

yes

O75940

9.0E-96

Survival of motor neuron-related-splicing

-

C/T

yes

P60517

4.0E-61

Gamma-aminobutyric acid receptor-

-

C/T

yes

Q6NUC2

1.0E-161

COP9 signalosome complex sub. 6

-

S/C

yes

Q28104

1.0E-141

Coatomer subunit epsilon

-

-

yes

Q2VIU1

7.0E-55

DNA-binding protein inhibitor ID-2

Om/Sf

S/C

yes

P30101

0.0E+00

Protein disulfide-isomerase A3 prec.

-

-

yes

Q6DH65

4.0E-81

Density-regulated protein

Om/Sf

S/C

yes

P26990

4.0E-99

ADP-ribosylation factor 6

-

yes

Q13491

1.0E-124

Neuronal membrane glycoprotein M6-b

-

-

yes

O93277

0.0E+00

WD repeat-containing protein 1

-

S/T

yes

P08132

1.0E-115

Annexin A4

-

-

no

Q12962

3.0E-63

Transcription initiation factor TFIID sub.

-

-

yes

Q9NS69

2.0E-18

Mitochondrial import receptor subunit

Ss/Sf

S/C

no

Q6AYU1

1.0E-158

Mortality factor 4-like protein 1

-

-

no

P50169

1.0E-95

Retinol dehydrogenase 3

-

-

yes

P59998

2.0E-87

Actin-related protein 2/3 complex sub. 4

-

-

no

Unknown

-

-

no

P62316

4.0E-52

Small nuclear ribonucleoprotein Sm D2

-

-

yes

P16527

8.0E-23

Myristoylated alanine-rich C-kinase sub.

-

S/T

yes

Unknown

-

-

yes

O54968

3.0E-80

Nuclear factor erythroid 2-related factor 2

-

-

no

P22232

1.0E-124

rRNA 2'-O-methyltransferase fibrillarin

Om/Sf

-

yes

P40926

1.0E-157

Malate dehydrogenase, mito. prec.

-

-

yes

Q64422

1.0E-138

Glucosamine-6-phosphate isomerase

Ss/Sf

S/C

yes

Q58DU5

1.0E-127

Proteasome subunit alpha type-3

-

C/T

yes

Q15008

0.0E+00

26S proteasome non-ATPase reg. sub.

C/T

no

Unknown

-

yes

Q16799

7.0E-77

Reticulon-1

-

yes

Q9D1J3

5.0E-39

Nuclear protein Hcc-1

-

yes

P19387

1.0E-145

DNA-directed RNA polymerase II subunit

-

yes

Q02878

1.0E-106

60S ribosomal protein L6

C/T

yes

Q802F2

3.0E-95

Selenoprotein T1a precursor