Table 5 Genome-wide and PP2C subfamily A occurrence of cis-regulatory elements (CREs) in the upstream regions of Arabidopsis and rice.
From: Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis
CRE | Species | Genomic data set | Subfamily A data set | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Real | Random | Real | Random | ||||
| Â | Â | Genomic data set | Frequency | Randomized d data set | Frequency | Subfamily A data set | Frequency | Randomized data set | Frequency |
ABRE | A. thaliana | 6492 | 24.21% | 3449 | 12.86% | 12 | 133% | 1 | 11.1% |
| Â | O. sativa | 9662 | 23.52% | 7331 | 17.85% | 10 | 100% | 1.50 | 15% |
G-box | A. thaliana | 2129 | 7.94% | 211 | 0.79% | 0 | 0 | 0 | 0 |
| Â | O. sativa | 3440 | 8.37% | 1109 | 2.70% | 5 | 50.00% | 0.60 | 6.0% |
CE3 | A. thaliana | 40 | 0.15% | 32 | 0.12% | 0 | 0 | 0 | 0 |
| Â | O. sativa | 3527 | 8.59% | 634 | 1.54% | 1 | 10.00% | 0.33 | 3.3% |
GCN4 | A. thaliana | 1029 | 3.84% | 961 | 3.58% | 0 | 0 | 0.5 | 5.56% |
| Â | O. sativa | 950 | 2.31% | 1354 | 3.30% | 0 | 0 | 0 | 0 |
HSE | A. thaliana | 32 | 0.12% | 15 | 0.06% | 0 | 0 | 0.1 | 1.11% |
| Â | O. sativa | 42 | 0.10% | 7 | 0.02% | 0 | 0 | 0 | 0 |
O2 | A. thaliana | 666 | 2.48% | 320 | 1.19% | 0 | 0 | 0 | 0 |
| Â | O. sativa | 1509 | 3.67% | 538 | 1.31% | 0 | 0 | 0.30 | 3.0% |
TC-rich | A. thaliana | 4691 | 17.49% | 2652 | 9.89% | 0 | 0 | 0.8 | 8.89% |
| Â | O. sativa | 3765 | 9.17% | 1996 | 4.86% | 0 | 0 | 0 | 0 |
TCA | A. thaliana | 1581 | 5.90% | 255 | 0.95% | 0 | 0 | 0 | 0 |
| Â | O. sativa | 2614 | 6.36% | 487 | 1.19% | 0 | 0 | 0 | 0 |
TGACG | A. thaliana | 4139 | 15.43% | 4005 | 14.93% | 5 | 55.56% | 1.20 | 13.33% |
| Â | O. sativa | 9221 | 22.45% | 10104 | 24.60% | 0 | 0 | 1.70 | 17.0% |