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Table 5 Genome-wide and PP2C subfamily A occurrence of cis-regulatory elements (CREs) in the upstream regions of Arabidopsis and rice.

From: Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis

CRE Species Genomic data set Subfamily A data set
   Real Random Real Random
   Genomic data set Frequency Randomized d data set Frequency Subfamily A data set Frequency Randomized data set Frequency
ABRE A. thaliana 6492 24.21% 3449 12.86% 12 133% 1 11.1%
  O. sativa 9662 23.52% 7331 17.85% 10 100% 1.50 15%
G-box A. thaliana 2129 7.94% 211 0.79% 0 0 0 0
  O. sativa 3440 8.37% 1109 2.70% 5 50.00% 0.60 6.0%
CE3 A. thaliana 40 0.15% 32 0.12% 0 0 0 0
  O. sativa 3527 8.59% 634 1.54% 1 10.00% 0.33 3.3%
GCN4 A. thaliana 1029 3.84% 961 3.58% 0 0 0.5 5.56%
  O. sativa 950 2.31% 1354 3.30% 0 0 0 0
HSE A. thaliana 32 0.12% 15 0.06% 0 0 0.1 1.11%
  O. sativa 42 0.10% 7 0.02% 0 0 0 0
O2 A. thaliana 666 2.48% 320 1.19% 0 0 0 0
  O. sativa 1509 3.67% 538 1.31% 0 0 0.30 3.0%
TC-rich A. thaliana 4691 17.49% 2652 9.89% 0 0 0.8 8.89%
  O. sativa 3765 9.17% 1996 4.86% 0 0 0 0
TCA A. thaliana 1581 5.90% 255 0.95% 0 0 0 0
  O. sativa 2614 6.36% 487 1.19% 0 0 0 0
TGACG A. thaliana 4139 15.43% 4005 14.93% 5 55.56% 1.20 13.33%
  O. sativa 9221 22.45% 10104 24.60% 0 0 1.70 17.0%