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Table 7 Comparison between SuperSAGE expression profiles and macroarray-generated data

From: SuperSAGE: the drought stress-responsive transcriptome of chickpea roots

Section Annotation Uniprot ACC
A ADP-glucose pyrophosphorylase precursor Q43819
  ADP-glucose pyrophosphorylase small subunit CagpS1 Q9AT06
  ADP-ribosylation factor 1-like protein Q70XK1
  ADP-ribosylation factor-like protein Q9LFJ7
  AP2/EREBP transcription factor ERF-1 Q5U8L5
  ATP-dependent Clp protease ATP-binding subunit clpC homolog CLPC
  Chaperonin 21 precursor Q9M5A8
  Cytochrome P450 Q9XGL7
  Cytochrome P450 73 cinnamic acid 4-hydroxylase TCMO
  Cytosolic chaperonin, delta-subunit Q9ZRX1
  Dehydration-responsive element binding protein Q8GZF2
  Dehydrin-cognate Q43430
  DREB-like protein Q75UJ6
  (RING zinc finger protein, putative, expressed) Q75I59
  Fiber protein Fb22 (Fragment) Q7Y244
  Fiber protein Fb27 Q6UA10
  Fiber protein Fb4 (Fragment) Q6UA21
  Glyceraldehyde 3-phosphate dehydrogenase, cytosolic O81924
  Histone H2A H2A2
  Kinesin (centromere protein)-like heavy chain-like protein Q9LHL9
  Lipoxygenase Q93YA9
  Metallothionein-like protein 1; MT-1 MT1
  PGM; Glucose phosphomutase PGMC
  Polygalacturonase inhibiting protein Q6V406
  Protein kinase Q41619
  Protein phosphatase-2C O82468
  RING/C3HC4/PHD zinc finger-like protein Q84KA9
  Root-specific metal transporter Q84LR1
  S-adenosylmethionine synthase Q6J9X6
  S-adenosylmethionine synthetase Q9FUZ1
  Similarity to zinc metalloproteinase Q9FKI1
  Translation initiation factor 5A Q6PQ38
  Trehalose-6-phosphate phosphatase O64897
  Zinc finger (C3HC4-type RING finger)protein-like Q67WE0
  Zinc finger (CCCH-type) protein-like Q657B3
  Zinc finger protein 5, ZFP5 Q8LCZ7
  Zinc finger-like Q6K719
B, D ADP-glucose pyrophosphorylase precursor Q43819
  ADP-glucose pyrophosphorylase small subunit CagpS1 Q9AT06
  AP2/EREBP transcription factor ERF-2 Q5U8L6
  ATP-dependent Clp protease ATP-binding subunit clpC homolog CLPC
  Beta-amylase; 1,4-alpha-D-glucan maltohydrolase AMYB
  Central motor kinesin 1 Q6WJ05
  Cinnamoyl CoA reductase Q7Y0H8
  Cytochrome P450 Q9XGL7
  Cytochrome P450 73 cinnamic acid 4-hydroxylase TCMO
  Eukaryotic translation initiation factor 5A isoform II Q71F50
  Eukaryotic translation initiation factor 5A-2; eIF-5A-2 IF5A2
  Fiber protein Fb19 (Fragment) Q7X9S1
  Glyceraldehyde 3-phosphate dehydrogenase, cytosolic O81924
  Glyceraldehyde-3-phosphate-dehydrogenase Q53I52
  Histone H2A.6 H2A6
  Lipoxygenase (EC 1.13.11.12) Q9LEA9
  Metallothionein-like protein 1; MT-1 MT1
  Metallothionein-like protein 2; MT-2 MT2
  Nine-cis-epoxycarotenoid dioxygenase1 Q8LP17
  Nodule-enhanced protein phosphatase type 2C Q9ZPL9
  P-type H+-ATPase Q41647
  PGM; Glucose phosphomutase PGMC
  Plasma membrane H+-ATPase Q7Y066
  Prolyl 4-hydroxylase alpha subunit-like protein Q8LAN3
  Protein kinase Q41619
  Protein phosphatase 2C Q8S8Z1
  Protein phosphatase 2C-like protein (AT4g31860/F11C18) Q9SZ53
  Protein phosphatase-2C O82469
  Putative metallophosphatase Q8VXF5
  S-adenosylmethionine synthetase Q9FUZ1
  Translation initiation factor 5A Q6PQ38
  Ubiquitin conjugating protein Q9M4R0
  Vacuolar assembly protein VPS41 homolog VPS41
  Zinc finger (CCCH-type) protein-like Q657B3
  Zinc finger protein-like Q5Z8K9
  Zinc finger protein-like Q69QZ4
  Zinc finger protein-like Q6K8E9
C ADP-glucose pyrophosphorylase precursor Q43819
  ADP-ribosylation factor 1-like protein Q70XK1
  Apyrase-like protein Q84UE1
  Chloroplast chaperonin 21 Q6B4V4
  Cysteine proteinase O81930
  Cytochrome P450 Q9XGL7
  Cytochrome P450 73 cinnamic acid 4-hydroxylase TCMO
  Dehydration responsive element binding protein Q7Y0Y9
  Dehydrin-like protein Q945Q7
  DNA binding zinc finger protein; Pspzf Q9ZWJ0
  ERD15 protein Q39096
  Fiber protein Fb11 Q8GT82
  Fiber protein Fb19 (fragment) Q6T7D1
  Fiber protein Fb2 Q8GT87
  Glyceraldehyde 3-phosphate dehydrogenase, cytosolic O81924
  Histone H2A H2A
  Kinesin-like protein; 73641–79546 Q9CAC9
  Late embryogenesis-like protein (Fragment) (LEA-Prot) O81366
  Lipoxygenase (EC 1.13.11.12) O04919
  Lipoxygenase (EC 1.13.11.12) Q93YI8
  Metalloendopeptidase Q40983
  Metallothionein-like protein 1; MT-1 MT1
  Metallothionein-like protein 2; MT-2 MT2
  Nonspecific lipid-transfer protein precursor; LTP NLTP
  P-type H+-ATPase Q9SAW3
  P-type H+-ATPase Q9AR52
  Prolyl 4-hydroxylase, alpha subunit-like protein Q9FKX6
  Protein phosphatase 2C O81709
  Putative imbibition protein Q9M442
  Root-specific metal transporter Q84LR1
  Rubisco activase Q8GTY4
  RuBisCO large subunit-binding protein subunit alpha RUBA
  Thiolprotease Q41064
  Transcription factor DRE-binding factor 2 Q6IVL3
  Translation initiation factor 5A Q6PQ38
  Trehalose-6-phosphate phosphatase O64897
  Ubiquitin conjugating enzyme O65733
  Ubiquitin conjugating enzyme Q43780
  Ubiquitin conjugating protein Q9M4R0
  UDP-glucose pyrophosphorylase Q8W557
  Vignain precursor (EC 3.4.22) CYSEP
  Vignain precursor; cysteine proteinase EP-C1 CYSEP
  1. Comparison between SuperSAGE expression profiles and macroarray-generated data (Boominathan and co-authors [5]). Three main categories from the cluster analysis in Figure 8 are detailed below.
  2. Section A: Constitutive tags versus upregulated transcripts on the macroarray.
  3. Section B, D: Non-corresponding SuperSAGE and macroarray transcript profiles.
  4. Section C: Up-regulated tags and up-regulated transcripts on the macroarray.