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Table 4 A list of transcripts associated with cuticle hardening that are up-regulated in late pre-molt (Cy3) crabs when compared against crabs in ecdysis (Cy5).

From: Differential expression profiling of components associated with exoskeletal hardening in crustaceans

Clone IDs BLAST results Score (Bits) E value M * t * P-value* Adjusted P-value*
Carcinin
(EF120999)
CAD20734 carcinin Carcinus maenas (antibacterial protein) 71.2 2e-11 4.769
4.52
4.366
4.358
4.32
4.209
4.176
13.448
14.309
17.315
10.443
16.541
12.818
15.864
0
0
0
0
0
0
0
0.01
0.01
0.01
0.015
0.01
0.01
0.01
PpCTLR
(EF120992)
AAP58737 C-type lectin receptor Paralabidochromis chilotes 46.6 8e-04 4.178
3.938
3.929
3.831
16.607
14.064
14.175
11.36
0
0
0
0
0.01
0.01
0.01
0.013
PpHEM1
(EF110531)
AY861676 Cancer magister hemocyanin subunit 1
AAW57889 hemocyanin subunit 1 C. magister
103
335
9e-19
1e-90
3.953
3.942
3.842
12.659
10.385
10.802
0
0
0
0.01
0.015
0.015
EF120998 AAD16454 clotting protein precursor Pacifastacus leniusculus (crayfish) 38.9 0.10 3.764 14.388 0 0.01
PpHEM3
(EF110533)
AF249297 Callinectes sapidus hemocyanin subunit mRNA
AAW57891 hemocyanin subunit 3 C. magister
807
432
0.0
1e-119
3.714
3.26
11.321
10.152
0
0
0.013
0.015
PpHEM4
(EF110534)
AF249297 C. sapidus hemocyanin subunit mRNA
AAF64305 hemocyanin subunit C. sapidus
870
472
0.0
6e-132
3.688
3.654
3.247
3.214
3.207
3.163
3.16
2.075
10.413
12.337
9.711
10.436
9.52
11.682
8.346
7.813
0
0
0
0
0
0
0.001
0.001
0.015
0.01
0.016
0.015
0.017
0.012
0.025
0.029
PpHEM7
(EF110537)
AY861677 C. magister hemocyanin AAW57890 hemocyanin C. magister 290
455
6e-75
1e-126
3.628
3.548
3.187
8.628
10.607
7.652
0.001
0
0.001
0.022
0.015
0.03
PpHEM6
(EF110536)
AF249297 C. sapidus hemocyanin subunit mRNA
AAW57891 hemocyanin subunit 3 C. magister
807
432
0.0
1e-119
3.572
3.565
3.429
3.37
3.297
3.211
2.979
9.35
13.009
10.33
9.005
7.107
9.707
9.247
0
0
0
0
0.001
0
0
0.018
0.01
0.015
0.02
0.037
0.016
0.018
PpTRY3
(EF120995)
Y15041 PVTRYPSN3 Penaeus vannamei trypsin gene
CAA75311 trypsin Litopenaeus vannamei
63.9
253
6e-07
3e-66
3.474
3.278
3.024
2.892
8.198
12.823
6.46
6.616
0.001
0
0.002
0.002
0.025
0.01
0.048
0.047
PpHEM5
(EF110535)
AF249297 C. sapidus hemocyanin subunit
AAW57893 hemocyanin subunit 5 C. magister
327
195
3e-86
2e-89
3.339 12.09 0 0.01
PpHEM2
(EF110532)
AY861677 C. magister hemocyanin subunit2 AAW57890 hemocyanin subunit 2 C. magister 176
160
8e-41
1e-47
3.33 10.225 0 0.015
PpTRY1
(EF120993)
AB205408 Seriola quinqueradiata mRNA for trypsinogen
CAA75310 trypsin L. vannamei
75.8
318
2e-10
2e-85
3.275
3.122
12.784
7.468
0
0.001
0.01
0.033
PpTRY2
(EF120994)
AAL67442 trypsin Paralithodes camtschaticus 62.0 1e-08 2.769 6.565 0.002 0.047
  1. M = log2 fold change in expression, t = t-statistic, and the P value = t-distribution. The adjusted P values were calculated using the False Discovery Rate (FDR) procedure. Positive values of M and t indicate up-regulation in the Cy3 sample (* multiple values represent several cDNAs all forming one contig).