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Table 4 List and characteristics of the non-fungal genomes archived in SNUGB.

From: SNUGB: a versatile genome browser supporting comparative and functional fungal genomics

Speciesa Size (Mb) # of ORFs # of Exons Cb Ib Eb Source Refs
Chloroplastida (Kingdom)e         
   Streptophyta (Phylum)         
Arabidopsis thaliana 119.2 28,581 150,369 5 Y N TAIR [33]
Carica papaya 271.7 N N N N N PGSC [84]
Glycine max 996.9 62,199 281,102 N N N JGI N
Lycopersicon esculentum c 39.9 8,725 29,707 N Y N SOL N
Medicago truncatula 278.7 38,334 122,889 8 Y N MTGSP [8587]
Oryza sativa var. Indicad 426.3 49,710 N N N N BGI [88, 89]
Oryza sativa var. Japonica 372.1 66,710 319,140 12 Y N IRGSP [89, 90]
Populus trichocarpa 485.5 45,555 193,687 N Y N JGI [91]
Ricinus communis d 362.5 38,613 N N N N TIGR N
Selaginella moellendorffii 212.8 22,285 124,645 N Y N JGI N
Sorghum bicolor 738.5 36,338 165,149 11 Y N JGI N
Vitis vinifera 497.5 30,434 149,351 19 Y N GS [92]
Zea mays d 2,314.7 420,732 N N N N MGSP N
Metazoa (Kingdom)         
   Arthropoda (Phylum)         
Apis mellifera 235.2 11,062 71,496 N N N HBGP [93]
Acyrthosiphon pisum 446.6 N N N N N BCM N
Bombyx mori 397.7 21,302 82,381 N N N BGI [94]
Drosophila ananassae 231.0 15,276 56,595 N N N FB [95]
Drosophila erecta 152.7 15,324 56,924 N N N FB [95]
Drosophila grimshawi 200.5 15,270 56,647 N N N FB [95]
Drosophila melanogaster 168.7 20,923 96,745 N N N FB [96]
Drosophila mojavensis 193.8 14,849 55,013 N N N FB [95]
Drosophila persimilis 188.4 17,235 59,116 N N N FB [95]
Drosophila pseudoobscura 152.7 16,363 57,864 N N N FB [97]
Drosophila sechellia 166.6 16,884 58,584 N N N FB [95]
Drosophila simulans 137.8 15,983 54,294 N N N FB [95]
Drosophila virilise 206.0 14,680 55,005 N N N FB [95]
Drosophila willistoni 235.5 15,816 56,641 N N N FB [95]
Drosophila yakuba 165.7 15,423 59,098 N N N FB [95]
Glossina morsitans 205.7 N N N N N TIGR N
Nasonia vitripennis 239.6 27,957 98,570f N N N BCM N
Tribolium castaneum 152.1 14,274 58,381f N N N BCM N
   Nematoda (Phylum)         
Caenorhabditis elegans 100.3 26,902 175,232 7 N N WB [34]
Caenorhabditis briggsae d 108.5 20,669 N N N N WB [98]
Caenorhabditis remanei 145.4 N N N N N WB N
   Vertebrata (Phylum)         
Homo sapiens Celera assembly 2,828.4 28,057 273,999 N N N NCBI [99]
Homo sapiens HuRef assembly 2,843.9 27,937 273,135 N N N NCBI [100]
Homo sapiens NCBI Reference 2,870.8 29,319 284,553 N N N NCBI [100]
Homo sapiens 3,665.5 43,570 452,099 29 N N EM [100]
Total 21,241.0 1,294,281 4,142,169 7 8 0   
  1. aA indicates anamorph name and T presents teleomorph name of fungi
  2. bC means chromosomes, I indicates InterPro, and E presents EST.
  3. cIncomplete coverage of genome information
  4. dInsufficient exon/intron information
  5. eTaxonomy based on [101]
  6. fORFs and exons were predicted by AUGUSTUS 2.0.3 with species-specific training datasets [55].
  7. 'Y' indicates the existence of information in each field, and 'N' indicates the lack of information.