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Table 1 Transcription factors preferentially expressed in leaves

From: A cross-species transcriptomics approach to identify genes involved in leaf development

a) Digital Northern
EST library Family Gene Model Protein ID Linkage group Start bp End bp Clostest ATG Annotation
K CCAAT-HAP3 estExt_fgenesh4_kg.C_LG_IX0001 814069 IX 422283 424607 At2g27470 CCAAT-box binding transcription factor subunit HAP3-related
T CCAAT-HAP5 eugene3.00130826 571462 XIII 7433295 7434557 At1g51060 Histone H2A
T C2C2-YABBY grail3.0018017701 646464 III 10874457 10877479 At2g45190 AFO/YAB1
b) Microarray
  bHLH gw1.29.118.1 423606 scaffold 29 2272702 2274494 At5g46690 loop-helix (bHLH) family protein
  C2C2-YABBY gw1.XVI.2137.1 256198 XVI 4660471 4663832 At2g26580 YAB5
  C2C2-YABBY gw1.I.9758.1 181158 I 11002077 11007440 At2g26580 YAB5
  C2C2-YABBY grail3.0018017701 646464 III 10874457 10877479 At2g45190 AFO/YAB1
  C2C2-YABBY grail3.0035001101 663774 XIV 1201250 1204103 At2g45190 AFO/YAB1
  C2C2-YABBY estExt_Genewise1_v1.C_1270153 744044 scaffold 127 432420 435374 At2g45190 AFO/YAB1
  CCAAT-HAP5 gw1.133.51.1 268609 scaffold 133 194018 194708 At5g27670 Histone H2A
  GRF eugene3.00021070 551755 II 8750087 8753351 At4g37740 GRF2
  HB estExt_fgenesh4_pm.C_LG_II1004 830518 II 19705723 19710899 At1g05230 homeobox-leucine zipper family protein
  HMG gw1.I.8656.1 180056 I 6841319 6843651 At4g11080 High mobility group (HMG1/2) family protein
  HMG estExt_fgenesh4_pg.C_LG_VII1313 820147 VII 12719268 12721109 At5g23420 High mobility group (HMG6)
  MYB gw1.147.131.1 271563 scaffold 147 383655 384226 At1g22640 myb family transcription factor (MYB3)
  MYB estExt_fgenesh4_pm.C_LG_VI0283 831892 VI 5731437 5734378 At2g37630 AS1
  MYB gw1.XII.82.1 421622 XII 9811004 9812387 At5g14750 Werewolf1 (WER1)
  ZF-HD gw1.IV.4567.1 199478 IV 11561033 11561668 At2g02540 zinc finger homeobox family protein (ZFHD4)
  ZF-HD fgenesh4_pg.C_LG_V001422 761370 V 15831484 15832356 At2g18350 zinc finger homeobox family protein ATHB24)
  ZF-HD gw1.41.334.1 287849 scaffold 41 1309979 1310581 At4g24660 zinc finger hmeobox family protein ATHB22/MEE68)
  ZF-HD gw1.V.4670.1 209269 V 8372094 8372846 At5g65410 zinc finger homeobox family protein (ZFHD2)
  1. Transcription factors significantly over-represented in leaf EST libraries contained in PopulusDB [53] and identified as being informative in the discrimination of leaves from non-leaf tissues in the UPSC-TC experiments using Orthogonal Projection to Latent Sqaures.