Table 3 Potential new miRNA genes
From: High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
sRNA | Chr | Start | No reads | Sequence | N. blot | miRNA* |
|---|---|---|---|---|---|---|
miR2086 | MtChr2 | 22878303 | 1164 | GACATGAATGCAGAACTGGAA | + | Yes |
C2 | MtChr5 | 23546032 | 485 | TGAGAATGTTAGATACGGAAC | - | No |
miR1510b | MtChr5 | 17425793 | 721 | ACATGGTCGGTATCCCTGGAA | + | Yes |
miR1507 | MtChr8 | 34001142 | 1170 | CCTCGTTCCATACATCATCTAG | + | Yes |
C5_1 | MtChr4 | 10481611 | 414 | GGTCCCCGGCAGCGGCGCCA | - | No |
C5_2 | MtChr4 | 10570962 | 414 | GGTCCCCGGCAGCGGCGCCA | - | No |
C5_3 | MtChr4 | 10515784 | 414 | GGTCCCCGGCAGCGGCGCCA | - | Yes |
miR1510a | MtChr5 | 17429726 | 170 | CGGAGGATTAGGTAAAACAAC | + | No |
C7 | MtChr2 | 13077141 | 50 | AAAAGAATACTCATACATAACATT | + | No |
C8 | MtChr7 | 2887662 | 29 | TGTAAGGGATGATGCAAATGAGAG | + | No |
C9_1 | MtChr2 | 6722889 | 28 | AGGGTGCTTAGATATAGGGACGGA | + | No |
C9_2 | MtChr8 | 2492462 | 28 | AGGGTGCTTAGATATAGGGACGGA | + | No |
C9_3 | MtChr8 | 10174192 | 28 | AGGGTGCTTAGATATAGGGACGGA | + | No |
miR1509 | MtChr7 | 31515912 | 90 | TTAATCTAGGAAAATACGGTG | + | Yes |
C12 | MtChr2 | 26140680 | 19 | GAAAGGACTAAAACCAGGAACGGA | - | No |
C13 | MtChr2 | 25488088 | 24 | TACGCAGGAGAGATGATGCCG | - | No |
C14 | MtChr5 | 28947435 | 44 | CTTGGACTTCAAGAAACAAC | - | No |
miR2087 | MtChr2 | 9824368 | 35 | GAAGTAAAGAACCGGCTGCAG | + | Yes |
C16 | MtChr1 | 29344468 | 38 | TAACTGCCGAGGCGTGCTGA | - | No |
C17 | MtChr4 | 20677608 | 30 | TGATGACGGAAGAAATCCAAA | - | No |
C18 | MtChr6 | 2189030 | 16 | AGATGGAGATTAGACGGCTCA | - | No |
C19 | MtChr5 | 13285282 | 16 | AGATTTAGGCGGCTTTGAACT | - | No |
C20 | MtChr6 | 8477357 | 22 | TGGACTGAAGACAAAGAGAAA | - | No |
C21_1 | MtChr4 | 33246760 | 13 | ATTTTTCAGCGGAAGTTAA | - | No |
C21_2 | MtChr4 | 27138541 | 13 | ATTTTTCAGCGGAAGTTAA | - | No |
miR2088_1 | MtChr8 | 14579972 | 11 | AGGCCTAGATTACATTGGAC | + | Yes |
miR2088_2 | MtChr8 | 14675564 | 11 | AGGCCTAGATTACATTGGAC | + | Yes |
C23 | MtChr5 | 31612014 | 12 | TGTTGGAACACGGCTTAAGGT | - | No |
C24 | MtChr3 | 13221230 | 12 | TAGGTTTGAGAAAATGGGCA | - | No |
C25 | MtChr8 | 24335508 | 11 | TCTGTCAGTAGACTCAAT | - | No |
C26 | MtChr5 | 28244439 | 9 | AAGGGCATATGTTAAGGAAC | - | No |
miR2089 | MtChr5 | 17442776 | 9 | TTACCTATTCCACCAATTCCAT | + | Yes |