Evaluating genome-wide DNA methylation changes in mice by Methylation Specific Digital Karyotyping

BMC Genomics

Table 2 Selected candidate genes for real-time PCR analysis

*Genomic Tag*	*LMD*	*Chr*	*Position*	*Strand*	*Gene*
CGACAGAGGGCCGGGGG	6	18	80870439	-	Nfatc1 (nuclear factor of activated T-cells)
CAGAATGGGTGCTGCCT	6	19	29317014	+	Jak2 (Janus kinase 2)
GTAGAGGAGGGGGAGAG	8	1	193838624	+	Rcor3 (REST corepressor 3)
ATAAGCAGGGGTGCGGG	8	19	5085417	+	Tmem151a (Hypothetical protein LOC381199)

Genomic tags are indicated as 17 bp sequences with the corresponding counts as found in each MSDK library, location within the genome, strand orientation and associated gene. A complete list can be found in Additional file 1 and [9].

ISSN: 1471-2164