Table 1 Key genes encoding synthesis of TAG, wax esters, PHA, glycogen and PolyP by R. jostii RHA1.
Gene ID | Gene name | Enzyme name | Length (aa) | Accession number* | Selected ortholog | Aminoacid identity (%) |
|---|---|---|---|---|---|---|
ro00753 | phaC 1 | PHA synthase | 568 | YP_700746 | PhaCRrR. ruber | 37 |
ro00754 | phaZ 1 | PHA depolymerase | 323 | YP_700747 | ORF4 R. ruber | 12 |
ro03778 | phaC 2 | PHA synthase | 565 | YP_703736 | PhaCRrR. ruber | 39 |
ro03776 | phaZ 2 | PHA depolymerase | 271 | YP_703734 | ORF4 R. ruber | 14 |
ro04491 | phaC 3 | PHA synthase | 565 | YP_704435 | PhaCRrR. ruber | 39 |
ro04489 | phaZ 3 | PHA depolymerase | 274 | YP_704433 | ORF4 R. ruber | 14 |
ro05974 | glgA | Probable glycosyltransferase | 406 | YP_705909 | GlgA Mycobacterium sp. MCS | 73 |
ro05975 | glgC | ADP glucose Pyrophosphorylase | 404 | YP_705910 | GlgC M. tuberculosis H37Rv | 83 |
ro01447 | glgP | Glycogen phosphorylase | 862 | YP_701423 | GlgP M. tuberculosis H37Rv | 69 |
ro01448 | glgE | Probable alpha amylase | 672 | YP_701424 | GlgE M. smegmatis | 66 |
ro01449 | glgB | Glycogen branching enzyme | 732 | YP_701425 | GlgB Mycobacterium sp. MCS | 70 |
ro01056 | glgX | Probable glycogen debranching enzyme | 753 | YP_701041 | GlgX Mycobacterium sp. MCS | 75 |
ro00023 | atf 1 | WS/DGAT | 436 | YP_700017 | Atf1 A. baylyi ADP1 | 21 |
ro00024 | atf 2 | WS/DGAT | 477 | YP_700018 | Atf1 A. baylyi ADP1 | 24 |
ro00039 | atf 3 | WS/DGAT | 473 | YP_700033 | Atf1 A. baylyi ADP1 | 23 |
ro00087 | atf 4 | WS/DGAT | 461 | YP_700081 | Atf1 A. baylyi ADP1 | 32 |
ro00583 | atf 5 | WS/DGAT | 430 | YP_700576 | Atf1 A. baylyi ADP1 | 26 |
ro01601 | atf 6 | WS/DGAT | 453 | YP_701572 | Atf1 A. baylyi ADP1 | 38 |
ro02966 | atf 7 | WS/DGAT | 467 | YP_702929 | Atf1 A. baylyi ADP1 | 37 |
ro05356 | atf 8 | WS/DGAT | 463 | YP_705294 | Atf1 A. baylyi ADP1 | 37 |
ro05649 | atf 9 | WS/DGAT | 484 | YP_705586 | Atf1 A. baylyi ADP1 | 21 |
ro06332 | atf 10 | WS/DGAT | 474 | YP_706267 | Atf1 A. baylyi ADP1 | 27 |
ro06855 | atf 11 | WS/DGAT | 464 | YP_706785 | Atf1 A. baylyi ADP1 | 29 |
ro08369 | atf 12 | WS/DGAT | 301 | YP_707571 | Atf1 A. baylyi ADP1 | 35 |
ro08645 | atf 13 | WS/DGAT | 473 | YP_707847 | Atf1 A. baylyi ADP1 | 36 |
ro08660 | atf 14 | WS/DGAT | 497 | YP_707862 | Atf1 A. baylyi ADP1 | 24 |
ro06503 | ppk | Polyphosphate kinase | 734 | YP_706434 | Ppk Pseudomonas aeruginosa | 39 |
ro02065 | ppx1 | Exopolyphosphatase | 317 | YP_702030 | Ppx Pseudomonas aeruginosa | 17 |
ro05780 | ppx2 | Exopolyphosphatase | 314 | YP_705716 | Ppx Pseudomonas aeruginosa | 17 |
ro06647 | ppx3 | Exopolyphosphatase | 333 | YP_706578 | Ppx Pseudomonas aeruginosa | 11 |