Table 1 Characteristics of the assemblies with different data inputs
From: High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies
Coverage | Contigs (number) | Contigs (N50) | Scaffolds (number) | Scaffolds (N50) | Assembly size (% of reference) | Mis-assemblies | Total errors | Substitutions | Insertions/Deletions | |
|---|---|---|---|---|---|---|---|---|---|---|
Sanger | 7.4x | 173 | 39 kb | 2 | 2.2 Mb | 3.417 Mb (95%) | 0 | 3442 | 2494 | 948 |
Unpaired 454 | 20x | 119 | 48.7 kb | 119 | 48.7 kb | 3.542 Mb (98%) | 0 | 420 | 67 | 353 |
Unpaired + paired 454 | 25x | 119 | 58.2 kb | 10 | 1 Mb | 3.544 Mb (98%) | 0 | 431 | 75 | 356 |
unpaired + paired 454 with Illumina/Solexa GA1 | 25× and 50× | 119 | 58.2 kb | 10 | 1 Mb | 3.544 Mb (98%) | 0 | 163 | 71 | 92 |