Table 2 Top 25 up-regulated and 25 down-regulated genes on Affymetrix chips from SAS analysis
Affymetrix_ID | UniGene ID | Gene_Symbol | Log_fold_change (>0 = up-regulated; <0 = down-regulated) | -log10(p-value) for Estimate of diseased_healthy |
|---|---|---|---|---|
1367581_a_at, 1396689_at | Rn.8871 | Spp1 | 2.2450 | 41.2288 |
1378015_at | Rn.39658 | RGD:1311996 | 1.9669 | 35.0162 |
1367784_a_at | Rn.1780 | Clu | 3.3779 | 29.5397 |
1367913_at | Rn.105938 | Cygb | 1.4106 | 28.3857 |
1381343_at, 1383222_at | Rn.1708 | LOC257646 | 0.8336 | 22.6443 |
1386996_at | Rn.103179 | RGD:628855 | 0.7756 | 22.4535 |
1388114_at | Rn.103179 | Mrlcb | 0.7756 | 22.4535 |
1388745_at | Rn.54039 | RGD:1304636 | 0.7278 | 22.2871 |
1370992_a_at, 1371258_at | Rn.98846 | Fga | 1.0091 | 21.9972 |
1370186_at | Rn.13686 | Psmb9 | 0.9171 | 21.6556 |
1398347_at | Rn.16368 | RGD:1312008 | 1.1720 | 21.2353 |
1368504_at, 1398816_at | Rn.40177 | Lamp1 | 0.4187 | 20.6298 |
1368168_at | Rn.16933 | RGD:620889 | 2.1632 | 20.4333 |
1387391_at | Rn.10089 | Cdkn1a | 0.4408 | 20.1517 |
1373204_at | Rn.17071 | RGD1310725_predicted | 1.1134 | 18.9746 |
1369956_at | Rn.19927 | RGD:620570 | 0.5636 | 18.7804 |
1385625_at, 1393240_at | Rn.16151 | Efemp2 | 1.0126 | 18.3754 |
1368207_at | Rn.24997 | Fxyd5 | 0.7122 | 17.9030 |
1371244_at | Rn.2498 | RGD:1307758 | 0.5877 | 17.6513 |
1368160_at | Rn.34026 | Igfbp1 | 1.0420 | 17.1419 |
1368821_at, 1368822_at, 1371331_at, 1394119_at | Rn.95652 | Fstl1 | 0.7759 | 17.1139 |
1389189_at, 1396539_at, 1398294_at | Rn.6401 | Actn1 | 1.4167 | 16.9389 |
1367712_at | Rn.25754 | Timp1 | 1.3548 | 16.9170 |
1387892_at | Rn.2458 | Tubb5 | 1.0106 | 16.8147 |
1367823_at, 1375144_at, 1386940_at, 1388312_at | Rn.10161 | Timp2 | 0.2867 | 16.7147 |
1369400_a_at, 1388044_at, 1388063_a_at, 1398320_at | Rn.44844 | Pfkfb2 | -0.2293 | 20.3237 |
1370268_at | Rn.44291 | Kcna5 | -0.2714 | 17.3640 |
1369178_a_at, 1385148_at | Rn.91176 | P2rx1 | -0.2108 | 5.5590 |
1378419_at | Rn.87496 | LOC474169 | -0.3129 | 5.5606 |
1369279_at | Rn.81185 | Dhrs9 | -0.2163 | 5.5612 |
1388051_at | Rn.81026 | Slc26a3 | -0.3637 | 5.5618 |
1368695_at | Rn.11151 | C4bp-ps1 | -0.2888 | 5.5684 |
1369341_a_at | Rn.7033 | Acvrinp1 | -0.1886 | 5.5718 |
1394129_at, 1396858_at | Rn.7033 | Acvrip1 | -0.1886 | 5.5718 |
1369358_a_at | Rn.37430 | Hap1 | -0.1699 | 5.5727 |
1387320_a_at | Rn.89629 | RGD:708527 | -0.1887 | 5.5781 |
1367571_a_at, 1371206_a_at, 1398322_at | Rn.118681 | Igf2 | -0.1007 | 5.5784 |
1371564_at | Rn.103171 | RGD:735157 | -0.1572 | 5.5789 |
1387292_s_at, 1387991_at | Rn.80837 | Capn8 | -0.2614 | 5.5793 |
1369253_at | Rn.90021 | Kremen | -0.2313 | 5.5831 |
1369240_a_at | Rn.10096 | Avpr1b | -0.2056 | 5.5835 |
1382417_at | Rn.90967 | RGD:1309306 | -0.1498 | 5.5848 |
1369552_at | Rn.81187 | Samsn1 | -0.2144 | 5.5849 |
1368763_at | Rn.10652 | Il3 | -0.2808 | 5.5851 |
1369444_at | Rn.21402 | Cyp19a1 | -0.3457 | 5.5866 |
1387582_a_at | Rn.81203 | Pde7b | -0.2523 | 5.5870 |
1375494_a_at, 1387409_x_at | Rn.10263 | Nlgn3 | -0.1551 | 5.5897 |
1377146_at | Rn.18675 | RGD:621647 | -0.2512 | 5.5908 |
1387615_at | Rn.44391 | RGD:621843 | -0.2146 | 5.5965 |
1387065_at, 1395839_at | Rn.37434 | Plcd4 | -0.2386 | 5.5978 |