Genomic organization, sequence divergence, and recombination of feline immunodeficiency virus from lions in the wild

Pecon-Slattery, Jill; McCracken, Carrie L; Troyer, Jennifer L; VandeWoude, Sue; Roelke, Melody; Sondgeroth, Kerry; Winterbach, Christiaan; Winterbach, Hanlie; O'Brien, Stephen J

doi:10.1186/1471-2164-9-66

Table 1 Gene size and location within FIV_PleSubtypes B and E compared with previously published FIV_Fca, FIV_Omaand FIV_Pco.

From: Genomic organization, sequence divergence, and recombination of feline immunodeficiency virus from lions in the wild

	5'LTR	5'UTR	Gag	Pol	Vif	OrfA	Env	PPT	3'LTR
FIV_PleSubtype B (Serengeti)
Gene position	1–398	399–704	705–2213	2018–5464	5461–6171	6288–6542	6601–9213	9484–9498	9501–9899
Gene length (bp)	398	306	1509	3447	711	255	2613	15	398
Translated Protein Size (# aa)			503	1149	237	85	871
FIV_PleSubtype E (Botswana)
Gene Position	1–397	398–702	703–2199	2004–5450	5447–6211	6198–6452	6532–9222	9478–9492	9495–9891
Gene length (bp)	397	306	1497	3447	765	255	2691	15	397
Translated Protein Size (# aa)			498	1149	255	85	897
FIV_FcaPetaluma (Subtype A)
Gene Position	1–355	356–627	628–1980	1868–5243	5236–5991	5992–6228	6266–8836	9098–9117	9120–9474
Gene length (bp)	355	272	1353	3375	756	237	2571	19
Translated Protein Size (# aa)			451	1125	252	79	857
FIV_FcaUSIL (Subtype B)
Gene position	1–361	362–633	634–1983	1875–5248	5239–5994	5995–6231	6269–8830	9092–9110	9102–9462
Gene length (bp)	361	272	1350	3374	756	237	2562	17	361
Translated Protein Size (# aa)			451	1124	252	79	854
FIV_FcaSubtype C
Gene Position	1–354	355–632	633–1985	1874–5248	5241–5996	5997–6233	6271–8835	9092–9100	9113–9466
Gene length (bp)	354	278	1353	3375	756	237	2565	19	354
Translated Protein Size (# aa)			451	1125	252	79	855
FIV_Oma
Gene Position	1–376	377–684	685–2181	1980–5432	5429–6187	6188–6448	6512–9103	9360–9375	9378–9751
Gene length (bp)	376	308	1497	3453	759	261	2592	16	374
Translated Protein Size (# aa)			499	1161	253	87	864
FIV_PcoPLV-14 Subtype A (Florida)
Gene Position	1–311	312–615	616–2055	2199–5459	5419–6249	5759–5938	6250–8772	8771–8787	8790–9100
Gene length (bp)	311	304	1440	3261	831	180	2523	17	311
Translated Protein Size (# aa)			480	1087	277	59	841
FIV_PcoPLV-1695 Subtype B (British Columbia)
Gene Position	1–306	307–638	639–2024	1886–5323	5298–6008	5972–6310	6283–8715	8772–8784	8787–9092
Gene length (bp)	306	332	1386	3438	711	339	2433	13	305
Translated Protein Size (# aa)			462	1146	237	113	811

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ISSN: 1471-2164

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